Table 3.

Gene ontology analysis of miRNA targets vs. the whole genome; first ten enriched biological processes.

GO	Biological Process	Count in Network	FDR
GO:0048518	Positive regulation of biological process	826 of 6112	2.85 × 10−165
GO:0048522	Positive regulation of cellular process	791 of 5579	4.50 × 10−165
GO:0048519	Negative regulation of biological process	762 of 5389	6.31 × 10−154
GO:0048523	Negative regulation of cellular process	720 of 4874	7.11 × 10−150
GO:0009893	Positive regulation of metabolic process	642 of 3893	3.33 × 10−147
GO:0010604	Positive regulation of macromolecule metabolic process	611 of 3600	1.93 × 10−142
GO:0031325	Positive regulation of cellular metabolic process	587 of 3413	5.69 × 10−137
GO:0051173	Positive regulation of nitrogen compound metabolic process	567 of 3239	1.25 × 10−133
GO:0031323	Regulation of cellular metabolic process	781 of 6239	1.77 × 10−130
GO:0019222	Regulation of metabolic process	823 of 6948	1.27 × 10−129

FDR = false discovery rate; GO = gene ontology classification.