Table 2.

SNPs and indels found in the Tel1 genome relative to the standard reference sequence of chromosome arm 3R between coordinates 19,325,278 and 19,404,278.

Polymorphisms	SNPs	Indels
Identified by CLC-Genomics	626	88
Identified by manual comparison	-	13
Identified by de novo assembly	-	14
Total	626	115
Not in DGRP a	0	2

^a There were 159 DGRP lines used in the SNP comparison (Freeze1 data) and eight used in the indel comparison.