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. 2022 Nov 14;11:e78743. doi: 10.7554/eLife.78743

Table 1. Model Parameters.

Parameter Brief description Value Source
ka Association rate to the nucleoid of cytosolic ParA 0.19 s–1 As Surovtsev et al., 2016a. Based on in vitro measurement from Vecchiarelli et al., 2010. Results in 95% ParA nucleoid association in the absence of a plasmid.
kd Dissociation due to basal hydrolysis rate of ParA 0.01 s–1 Based on in vitro measurement from Hwang et al., 2013; Vecchiarelli et al., 2013.
kh Tether dissociation due to plasmid stimulated hydrolysis of ParA 0.01–3 s–1 Sweeped over in this study.
Dp Diffusion coefficient of the plasmid 3x10–3 μm2s–1 As Surovtsev et al., 2016a.
Based on MSD of a Δpar plasmid.
Dh Diffusion coefficient of ParA home position on the nucleoid 3.22x10–4 to 0.29 μm2s–1 Sweeped over in this study.
DA Diffusion coefficient of DNA-bound ParA due to chromosomal fluctuations 0.01 μm2s–1 As Surovtsev et al., 2016a; Based on Javer et al., 2014 and Weber et al., 2010.
W Width of the cell 0.95 μm This study
L Length of the cell 2.5–4.34 μm This study
dt Simulation time step 0.001 s This study
Rp Radius Plasmid 0.05 μm As Surovtsev et al., 2016a. Estimate from Sanchez et al., 2015.
RA Radius ParA 0.002 μm As Surovtsev et al., 2016a. Based on ParA crystal structure from Leonard et al., 2005.
σx Width of elastic fluctuations of the chromosome along long cell axis 0.1 μm As Surovtsev et al., 2016a.
σy Width of elastic fluctuations of the chromosome along short cell axis 0.05 μm As Surovtsev et al., 2016a.
nA Number of ParA dimers 500 Midrange estimate from Adachi et al., 2006; Bouet et al., 2005; Lim et al., 2014.
np Number of Plasmids 1–5 This study