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. 2022 Nov 7;15:e00213. doi: 10.1016/j.mec.2022.e00213

Table 1.

Overview of metabolic engineering strategies for terpenoid production in Y. lipolytica.

Compound Carbon Source Parental Strain Modifications related to terpenoid biosynthesis Titer Reference
Hemiterpenoids:
Isoprene glucose Po1g ↑HMG ↑ERG13 ↑IDI ↑PmISPS 530.4 μg/L (sealed vials) Shaikh and Odaneth (2021)
Monoterpenoids:
Limonene Glucose Pyruvic acid Po1f ↑TArLS ↑tSlNDPS1 ↑HMG ↑ERG12 23.6 mg/L (shakeflask) Cao et al. (2016)
Limonene Glucose Po1g ↑HMG (↑ClLS or ↑MsLS) D-limonene: 11.7 mg/L or Pang et al. (2019)
L-limonene: 11.1 mg/L, respectively (bioreactor)
Limonene Glycerol Citrate Po1f ↑TArLS ↑tSlNDPS1 ↑HMG ↑ERG12 165.3 mg/L (bioreactor) Cheng et al. (2019)
Limonene Glucose ATCC 20460 ↑HMG ↑ERG12 ↑ACL1 ↑SeACSL641P↑IDI ↑ERG20F88WN119W↓SQS ↑PfLS 35.9 mg/L (glass tube) Arnesen et al. (2020)
Limonene Lignocellulosic hydrolysate Citric acid Po1f ↑ssXR ↑ssXDH ↑XKS 20.57 mg/L (shake flasks) Yao et al. (2020)
↑TArLS ↑SltNDPS1 ↑HMG ↑ERG12
Limonene Waste cooking oil Po1f (↑ClLS or ↑MsLS) ↑HMG ↑IDI ↑tSlNDPS1 91.24 (D-limonene) and 83.06 (L-limonene) mg/L (shake flasks) Li et al. (2022)
Linalool Citrate Pyruvate Po1f ↑AaLIS ↑ERG20F88WN119W↑HMG ↑IDI 6.96 mg/L (shake flask) Cao et al. (2017)
α-pinene Waste cooking oil, soybean oil, or lignocellulosic hydrolysate medium Po1f ↑HMG ↑tSlNDPS1 ↑tPtPS ↑ERG8,12 ↑MBP-ERG12 ↑AMPD 33.8, 36.6 or 36.1 mg/L for each carbon source, respectively (shake flasks) Wei et al. (2021b)
Sesquiterpenoids:
Abscisic acid Glucose ATCC 20460 ↑HMG ↑ERG12 ↑ACL1 ↑SeACSL641P↑IDI ↑ERG20 ↓SQS ↑BcABA1-4 ↑BcCPR1 ↑POS5 ↑AtDTX50 263.5 mg/L (deepwell plate) Arnesen et al. (2022)
Amorphadiene Glucose Po1g ↑AaADS ↑HMG ↑ERG12 171.5 mg/L (shakeflask) Marsafari and Xu (2020)
α-bisabolene Waste cooking oil Po1g ↑HMG ↑GcABCG1 (↑AgαBS, ↑ZoβBS, or ↑HaγBS) 973.1 mg/L, Zhao et al. (2021)
β-bisabolene 68.2 mg/L, or
γ-bisabolene 20.2 mg/L, respectively (culture tubes)
(−)-α-bisabolol Glucose Po1f ↑POT1 ↑MrBBS ↑tHMG ↑ERG20 ↓SQS 364.23 mg/L (shake flasks) (Yirong Ma et al., 2021)
α-farnesene Glucose Fructose Po1h ↑tScHMG ↑IDI ↑MdFS-L-ERG20 260 mg/L (bioreactor) Yang et al. (2016)
α-farnesene Glucose Po1f ↑EcAtoB ↑BpHMG ↑ERG13 ↑MdFS-L-ERG20 ↑ERG12 ↑IDI ↑ERG8,19 ↑GPPS 25.55 g/L (bioreactor) (Y. Liu et al., 2019)
α-farnesene Glucose Glycerol Po1f ↑FS-L-ERG20 ↑tScHMG1 ↑IDI ↑HMG ↑ERG19 2.57 g/L (bioreactor) (S. C. Liu et al., 2020)
α-farnesene Oleic acid Po1f ↑VHb ↑MdFS-L-ERG20 ↑ERG12 ↑IDI ↑ERG8,19 10.2 g/L (bioreactor) (Y. Liu et al., 2021)
β-farnesene Glucose ATCC 20460 ↑HMG ↑ERG12 ↑ACL1 ↑SeACSL641P↑IDI ↑ERG20 ↑AaBFS 955 mg/L (glass tube) Arnesen et al. (2020)
β-farnesene Glucose Po1f ΔDGA1 ΔDGA2 ↑tHMG ↑BFS ↑ERG8,10,12, 13,19,20 IDI Δgut2 Δpox3,4,5,6 22.8 g/L (bioreactor) (T. Shi et al., 2021)
α-humulene Glucose Po1f ↑POT1 ↑AcACHS2PTS↑RpHMGPTS↑ANT1 ↑(ERG12,8,20,10,13,19)PTS↑IDIPTS 3.2 g/L (bioreactor) Guo et al. (2021)
α-santalene Glucose ATCC 201249 ↑ClSTS ↑ERG8 ↑tHMG 27.92 mg/L (bioreactor) Jia et al. (2019)
Nootkatone Glucose ATCC 201249 ↑CnVS ↑CnCYP706M1-tAtATR1 ↑tScHMG ↑ERG20 Nootkatone: 978.2 μg/L Guo et al. (2018)
Valencene Valencene: 22.8 mg/L (shake flask)
Valencene Glucose ATCC 20460 ↑HMG ↑ERG12 ↑ACL1 ↑SeACSL641P↑IDI ↑ERG20 ↓SQS ↑CnVS 113.9 mg/L (glass tube) Arnesen et al. (2020)
Sterols:
Campesterol Sunflower seed oil ATCC 201249 Δerg5XlDHCR7 453 mg/L (bioreactor) Du et al. (2016)
Campesterol Sunflower seed oil ATCC 201249 Δerg5DrDHCR7POX2 942 mg/L (bioreactor) Zhang et al. (2017)
Triterpenoids:
Betulinic acid Glycerol ATCC 201249 tHMG1SQSAtLUP1MtCYP716A12-tAtATR1 26.53 mg/L (shake flask) Sun et al. (2019)
Betulinic acid Glucose ATCC 201249 RcLUSBPLOLjCPRSQSSQEHMGMFE1 204.89 mg/L total triterpenoid (shake flask) Jin et al. (2019)
Ginsenoside K Glucose ATCC 201249 tHMGERG20SQSPgDSPgPPDS-L-tAtATR1PgUGT1 161.8 mg/L (bioreactor) Li et al. (2019)
Lupeol Glucose Pyruvic acid ATCC 201249 ↑RcLUS ↑HMG ↑SQS ↑SQE ↑OLE1 Δpah1 Δdgk1 411.72 (shake flasks) (J.-L. Zhang et al., 2020)
Oleanolic acid Glucose ATCC 201249 ↑tHMG ↑ERG20 ↑SQS ↑GgBAS ↑MtCYP716A12-L-tAtATR1 540.7 mg/L (bioreactor) (D. Li et al., 2020)
2,3-oxidosqualene Glucose ATCC 20460 ↑HMG ↑ERG12 ↓ERG7 ↑ACL1 ↑SeACSL641P↑IDI ↑ERG20 ↑SQS ↑SQE 22 mg/L (deepwell plate) Arnesen et al. (2020)
Protopanaxadiol Xylose ATCC 201249 ↑SsXR ↑SsXDH ↑XKS ↑PgDS ↑PgPPDS-L-AtATR1 ↑tHMG ↑ERG20 ↑SQS ↑TKL ↑TAL ↑TX Δpox1,2,3 300.63 mg/L (bioreactor) Wu et al. (2019)
Squalene Glucose Citrate Po1f ↑HMG ↑ACL1 ↑SeACSL641p 10 mg/gDCW (shake flask) Huang et al. (2018)
Squalene Glucose Po1f ↑carB ↑carRP ↑ERG8,10,12,13,19,20 ↑tHMG ↑IDI Δgut2 Δpox3,4,5,6 531.6 mg/L Gao et al. (2017b)
Squalene Glucose ATCC 20460 ↑HMG ↑ERG12 ↓ERG7 ↑ACL1 ↑ SeACSL641P↑IDI ↑ERG20 ↑SQS 402.4 mg/L (deepwell plate) Arnesen et al. (2020)
Squalene Glucose Po1g ↑SQS ↑HMG ↑MnDH2 502.7 mg/L (shake flask) (H. Liu et al., 2020)
Squalene Glucose Po1f Δpex10 Δure2 ↑HMG ↑DGA1 240.5 mg/L (shake flask) Wei et al. (2021a)
Diterpenoids:
Gibberellins Glucose GB20 ↑tHMG ↑GGPPS ↓SQS ↑AtCPS ↑AtKS ↑AtKO ↑YlCyb5 ↑AtATR2 ↑SsGGPPS ↑GfCyb ↑GfCybRed ↑GfCPR ↑GfDES ↑GfP450-1 ↑GfP450-2 ↑GfP450-3 ↑tAtCPS ↑tAtKS ↑tAtKO 12.81 mg/L GA3, 16.41 mg/L GA4, 0.79 mg/L GA7, and 4.70 mg/L GA9. Kildegaard et al. (2021)
Tetraterpenoids:
Astaxanthin Glucose GB20 ↑XdcrtYB ↑XdcrtI ↑HMG ↓SQS ↑XdcrtE ↑PscrtW ↑PacrtZ 54.6 mg/L (microtiterplate) Kildegaard et al. (2017)
Astaxanthin Glucose GB20 ↑XdcrtYB ↑XdcrtI ↑HMG ↓SQS ↑XdcrtE ↑SsGGPPS ↑HpBKT ↑HpCrtZ 285 mg/L (bioreactor) Tramontin et al. (2019)
Astaxanthin Safflower oil GB20 ↑XdcrtYB ↑XdcrtI ↑HMG ↓SQS ↑XdcrtE ↑PscrtW ↑PacrtZ 167 mg/L (bioreactor) (N. Li et al., 2020)
Astaxanthin Glucose Not described ↑PsCrtW-HpCrtZ-SKL ↑PsCrtW-HpCrtZ-oleosin ↑PsCrtW-HpCrtZ-KDEL ↑SaGGPPS ↑McCarRP ↑McCarB 858 mg/L (shake flasks) (Yongshuo Ma et al., 2021)
Cantaxanthin glucose Po1f ↑BsCrtW ↑McCarB ↑McCarRP ↑GGPPS 36.1 mg/L (shake flask) Cui et al. (2021)
β-carotene Glucose Po1f ↑McCarB ↑McCarRP ↑ERG8,10,12, 13,19,20 ↑GGPPS ↑tHMG ↑IDI Δpox3,4,5,6 4 g/L (bioreactor) Gao et al. (2017b)
β-carotene Glucose Po1f ↑GGPPS ↑SsCarS 0.41 mg/gDCW Gao et al. (2017a)
β-carotene Glucose ATCC 20460 ↑McCarB ↑McCarRP ↑HMG ↑GGPPS ↑DGA2 ↑GPD1 Δpox1–6 Δtgl4 6.5 g/L (bioreactor) Larroude et al. (2018)
β-carotene Glucose Po1g ↑EcAtoB ↑ScERG13, ↑HMG ↑ERG8,12,19,20 ↑IDI ↑GGPPS ↑McCarB ↑McCarRP 12.1 mg/gDCW Cui et al. (2019)
β-carotene Glucose S11073 (in-house strain collection) ↑McCarB ↑McCarRP 75 mg/L (shake flask) Bruder et al. (2020)
β-carotene Glucose ATCC 20460 ↑HMG ↑ERG12 ↑ACL1 ↑ SeACSL641P↑IDI ↑GGPPS ↓SQS ↑XdcrtYB ↑XdcrtI 164 mg/L (deepwell plate) Arnesen et al. (2020)
β-carotene Glucose Po1f ↑McCarB ↑McCarRP ↑GGPPS ↑HMG ↑ERG13 Δpox2,3 Δmfe 4.5 g/L (bioreactor) (X.-K. Zhang et al., 2020)
β-carotene Glucose Po1f ↑tHMG ↑BtCarB ↑BtCarRA ↑GGPPS Δgut2 ↑ERG13 ↑Hxk 2.4 g/L (bioreactor) Qiang et al. (2020)
β-carotene Glucose Po1f ↑tHMG ↑CarB ↑CarRP ↑GGPPS Δgut2 ↑DID2 2.01 g/L (bioreactor) Lv et al. (2020)
β-carotene Glucose IMUFRJ 50682 ↑McCarB ↑McCarRP ↑GGPPS 50.1 mg/L (shake flask) de Souza et al. (2020)
β-carotene Glucose Po1f ↑tHMG ↑BtCarB ↑BtCarRA ↑GGPPS Δgut2 ↑DID2 ∼2.6 g/L (bioreactor) Yang et al. (2021)
β-carotene Glucose Po1f ↑tHMG ↑GGPPS ↑BtCarRA ↑BtCarB 1.7 g/L (bioreactor) (L. Liu et al., 2021)
β-carotene Glucose Po1f ↑McCarB ↑McCarRP Δndt80 ∼12.5 mg/gDCW (96-well plate) Liu et al. (2022)
β-carotene Glucose Po1f ΔCLA4 ΔMHY1 ↑AfGGPS ↑IDI ↑ERG8,10,12,19,20 ↑VHb ↑MccarRP ↑GGPPS ↑McCarB ↑ScERG13 ↑HMG 7.6 g/L (bioreactor) (M. Liu et al., 2021)
β-carotene Glucose Po1f ↑ScCK ↑AtIPK ↑ERG12 ↑tHMG ↑ERG20 ↑IDI ↑XdcrtE ↑McCarB ↑McCarRPY27Ror McCarRPE78K 39.5 g/L β-carotene or 17.6 g/L lycopene, respectively (bioreactor) Ma et al. (2022)
Lycopene
Lycopene Glucose Fructose Po1f PaCrtEPaCrtBPaCrtI 242 mg/L (bioreactor) Nambou et al. (2015)
Lycopene Glucose H222 ↑PaCrtB ↑PaCrtI ↑GGPPS ↑HMG Δpox1–6 Δgut2 16 mg/gDCW (bioreactor) Matthäus et al. (2014)
Lycopene Glucose Po1f ↑HMG ↑PaCrtE ↑PaCrtB ↑PaCrtI ↑ERG8,19 213 mg/L (bioreactor) Schwartz et al. (2017)
Lycopene Glucose Po1f PaCrtEPaCrtBPaCrtI ↑AMPD 745 mg/L (bioreactor) Zhang et al. (2019)
Lycopene Glucose Palmitic acid Po1f ↑PvIDI ↑LpCrtE ↑LpCrtB ↑LpCrtI ↑AtIPK ↑ScCHK ↑ERG20 4.2 g/L (bioreactor) Luo et al. (2020)
Apocarotenoids:
α-ionone Glucose Po1f Proprietary information 408 mg/L (bioreactor) Czajka et al. (2020)
β-ionone Glucose Po1f ↑McCarB ↑McCarRPOfCCD1SsNphT7HpIDIERG8,10,12,13,19tHMGGPPSERG20-GGPPS 380 mg/L (bioreactor) Czajka et al. (2018)
β-ionone Glucose Po1f ↑McCarB ↑McCarRPPhCCD1GGPPStHMGERG8,10,12,13,19,20 Δpox3,5IDIbbPKbsPTA 0.98 g/L (bioreactor) Lu et al. (2020)

AaADS, Artimisia annua amorphadiene synthase. AaBFS, A. annua β-farnesene synthase. AaLIS, Actinidia arguta linalool synthase. AcACHS2, Aquilaria crassna α-humulene synthase. ACL1, ATP citrate lyase 1. AfGGPS, Archaeoglobus fulgidus geranylgeranyl diphosphate synthase. AgαBS, Abies grandis α-bisabolene synthase. AMPD, adenosine monophosphate deaminase. ANT1, peroxisomal adenine nucleotide transporter. AtATR1, Arabidopsis thaliana cytochrome P450 reductase 1. AtATR2, A. Thaliana cytochrome P450 reductase 2. AtCPS, A. Thaliana copalyl diphosphate synthase. AtDTX, A. thaliana abscisic acid exporter. AtIPK, A. thaliana isopentenyl phosphate kinase. AtKO, A. Thaliana ent-kaurene oxidase. AtKS, A. Thaliana ent-kaurene synthase. AtLUP1, A. thaliana lupeol synthase. BbPK, Bifidobacterium bifidum phosphoketolase. BcABA1, Botrytis cinerea cytochrome P450. BcABA2, B. cinerea cytochrome P450. BcABA3, B. cinerea α-ionylideneethane synthase. BcABA4, B. cinerea dehydrogenase. BcCPR1, B. cinerea cytochrome P450 reductase. BpHMG, Bordetella petrii 3-Hydroxy-3-methylglutaryl-CoA reductase. BpLO, Betula platyphylla lupeol C-28 oxidase. BsCrtW, Brevundimonas sp. β-carotene ketolase. BsPTA, Bacillus subtilis phosphotransacetylase. BtCarB, Blakeslea trispora phytoene dehydrogenase. BtCarRA, B. trispora phytoene synthase/lycopene cyclase. CarB, phytoene dehydrogenase from unknown species.CarRP, phytoene synthase/lycopene cyclase from unknown species.CLA4, protein kinase involved in hyphal development. ClLS, Citrus limon D-limonene synthase. ClSTS, Clausena lansium α-santalene synthase. CnCYP706M1-AtATR1, fusion of Callitropsis nootkatensis cytochrome P450 and AtATR1. CnVS, C. nootkatensis valencene synthase. Cyb5, Cytochrome b5. DGA1-2, diacylglycerol acyltransferase 1–2. DGK1, diacylglycerol kinase. DID2, endosomal sorting complex subunit. DrDHCR1, Danio rerio 7-dehydrocholesterol reductase. EcAtoB, Escherichia coli acetyl-CoA acetyltransferase. ERG10, acetyl-CoA acetyltransferase. ERG12, mevalonate kinase. ERG13, 3-hydroxy-3-methylglutaryl-CoA synthase. ERG19, mevalonate diphosphate decarboxylase. ERG20, farnesyl diphosphate synthase. ERG20F88WN119W, geranyl diphosphate synthase. ERG20-GGPPS, fusion of ERG20p and geranylgeranyl diphosphate synthase. ERG5, C22-sterol desaturase. ERG7, lanosterol synthase. ERG8, phosphomevalonate kinase. FS-L-ERG20, α-farnesene synthase from unknown species fused to ERG20p. GcABCG1, Grosmania clavigera ABC-G1 efflux pump. GfCPR, Fusarium (Gibberella) fujikuroi cytochrome P450 reductase. GfCyb, F. fujikuroi cytochrome b5. GfCybRed, F. fujikuroi cytochrome b5 reductase. GfDES, F. fujikuroi desaturase. GfP450-1, F. fujikuroi cytochrome P450 1. GfP450-2, F. fujikuroi cytochrome P450 2. GfP450-3, F. fujikuroi cytochrome P450 3. GgBAS, Glycyrrhiza glabra β-amyrin synthase. GGPPS, geranylgeranyl diphosphate synthase. GPD1, glyceraldehyde-3-phosphate dehydrogenase. GPPS, geranyl diphosphate synthase. GUT2, glycerol-3-phosphate dehydrogenase 2. HaγBS, Helianthus annuus γ-bisabolene synthase. HMG, 3-Hydroxy-3-methylglutaryl-CoA reductase. HpBKT, Haematococcus pluvialis β-carotene ketolase. HpCrtZ, H. pluvialis β-carotene hydroxylase. HpIPI, H. pluvialis isopentyl diphosphate isomerase. Hxk, hexokinase. IDI, isopentyl diphosphate isomerase. LjCPR, Lotus japonicus cytochrome P450 reductase. LpCrtB, Lamprocystis purpurea phytoene synthase. LpCrtE, L. purpurea geranylgeranyl diphosphate syntase. LpCrtI, L. purpurea phytoene desaturase. MBP-ERG12, Maltose binding protein N-terminally fused to ERG12p. McCarB, Mucor circinelloides phytoene dehydrogenase. McCarRP, M. circinelloides phytoene synthase/lycopene cyclase. MdFS-L-ERG20, Malus domestica α-farnesene synthase linked to ERG20p. MFE1, multifunctional β-oxidation enzyme 1. MHY1, transcription factor involved in hyphal formation. MnDH2, Mannitol dehydrogenase. MrBBS, Matricaria recutita (−)-α-bisabolol synthase. MsLS, Mentha spicata L-limonene synthase. MtCYP716A12-L-tAtATR1, Medicago truncatula cytochrome P450 fused to truncated AtATR1p. MtCYP716A12-tAtATR1, M. truncatula cytochrome P450 directly linked to truncated AtATR1p. NDT80, transcription factor affecting lipid and ergosterol biosynthesis. OfCCD1, Osmanthus fragrans carotenoid cleavage dioxygenase 1. OLE1, Δ9-fatty acid desaturase. PaCrtB, Pantoea ananatis phytoene synthase. PaCrtE, P. ananatis geranylgeranyl diphosphate syntase. PaCrtI, P. ananatis phytoene desaturase. PacrtZ, P. ananatis β-carotene hydroxylase. PAH1, phosphatidic acid phosphatase. PfLS, Perilla frutescens limonene synthase. PgDS, Panax ginseng dammarenediol II synthase. PgPPDS, P. ginseng cytochrome P450 enzyme. PgPPDS-L-AtATR1, PgPPDSp linked to AtATR1p. PgPPDS-L-tAtATR1, PgPPDSp linked to truncated AtATR1p. PgUGT1, P. ginseng UDP-glycosyltransferase. PhCCD1, Petunia hybrida carotenoid cleavage dioxygenase. PmISPS, Pueraria montana isoprene synthase. POS5, Putative NAD + kinase. POT1, 3-ketoacyl-CoA thiolase. POX1-6, peroxisome acyl-CoA oxidase 1–6. PsCrtW, Paracoccus sp. β-carotene ketolase. PsCrtW-HpCrtZ-KDEL, fusion of PsCrtW-HpCrtZp with endoplasmic reticulum targeting sequence. PsCrtW-HpCrtZ-oleosin, fusion of PsCrtW-HpCrtZp with lipid body targeting signal. PsCrtW-HpCrtZ-SKL, fusion of PsCrtW-HpCrtZp with peroxisome targeting signal. PTS, C-terminal peroxisomal targeting signal. PvIDI, Pseudescherichia vulneris isopentyl diphosphate isomerase. RcLUS, Ricinus communis lupeol synthase. RpHMG1, Ruegeria Pomeroyi NADH-dependent HMGp. SaGGPPS, Sulfolobus acidocaldarius geranylgeranyl diphosphate synthase. ScCHK, Saccharomyces cerevisiae choline kinase. tScHMG, truncated S. cerevisiae HMGp. SeACSL641P, mutated Salmonella enterica acetyl-CoA synthetase. SQE, squalene epoxidase. SQS, squalene synthase. SsCarS, Multifunctional Schizochytrium sp. carotene synthase. SsGGPPS, Synechococcus sp. GGPPS. SsNphT7, Streptomyces sp. acetoacetyl CoA synthase. SsXDH, Scheffersomyces stipites xylose dehydrogenase. SsXR, S. stipites xylose reductase. TAL, transaldolase. tArLS, truncated Agastache rugosa limonene synthase. tAtCPS, truncated AtCPSp with plastidial targeting sequence removed. tAtKO, truncated AtKOp with plastidial targeting sequence removed. tAtKS, truncated AtKSp with plastidial targeting sequence removed. TGL3-4, triacylglycerol lipase 3–4. TKL, transketolase. tPtPS, truncated Pinus taeda α-pinene synthase without plastidial targeting sequence. tSlNDPS1, truncated Solanum lycopersicum neryl diphosphate synthase 1 without plastidial targeting sequence. TX, xylose transporter. URE2, transcriptional regulator involved in nitrogen catabolism repression. VHb, Vitreoscilla stercoraria hemoglobin. XdcrtE, Xanthophyllomyces dendrorhous geranylgeranyl diphosphate synthase. XdcrtI, X. dendrorhous phytoene desaturase. XdcrtYB, X. dendrorhous bi-functional phytoene synthase/lycopene cyclase. XKS, xylulose kinase. XlDHCR7, Xenapus laevis 7-dehydrocholesterol reductase. ZoβBS, Zingiber officinal β-bisabolene synthase. The table and accompanying text is expanded from (Arnesen et al., 2020).