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Number of enriched pathways for selected gene sets.
| Study/tool | Hallmark | KEGG | GO | Reactome |
|---|---|---|---|---|
| balanced | 31 | 19 | 568 | 219 |
| confounded | 21 | 14 | 387 | 51 |
| ComBat-seq | 0 | 0 | 25 | 13 |
| limma | 12 | 7 | 153 | 29 |
| MNN | 3 | 8 | 77 | 51 |
| scMerge | 4 | 3 | 46 | 16 |
| Seurat [CCA] | 15 | 9 | 326 | 10 |
| Seurat [rPCA] | 16 | 3 | 235 | 71 |
| Scanorama | 0 | 5 | 59 | 5 |
