| Bacterial and virus strains |
|
|
E. coli: Strain OP50 |
CGC |
RRID:WB-STRAIN:WBStrain00041969 |
|
| Chemicals, peptides, and recombinant proteins |
|
| Ethyl methanesulfonate 99% |
Fisher Scientific |
AAA1293806 |
| SU-8 Photoresist |
Kayaku Advanced Materials |
Y111077 0500L1GL |
| 1-methoxy-2-propanol acetate |
VWR (Avantor Performance Materials US) |
JT6343-5 |
| 1H,1H,2H,2H-Perfluorooctyltrichlorosilane |
Fisher Scientific |
AAL1660609 |
| Sylgard 184 Kit |
Ellsworth Adhesives |
184 SIL ELAST KIT 3.9KG |
|
| Critical commercial assays |
|
| Qiagen DNeasy Blood and Tissue Kit |
Qiagen |
69504 |
|
| Experimental models: Organisms/strains |
|
|
C. elegans: Strain DCD214 [myo-2p::tagRFP::pab-1] |
CGC |
RRID:WB-STRAIN: WBStrain00005606 |
|
C. elegans: Strain PS3551 [hsf-1(sy411)] |
CGC |
RRID:WB-STRAIN: WBStrain00030901 |
|
C. elegans: Strain KU2 [jkk1(km2)] |
CGC |
RRID:WB-STRAIN: WBStrain00024034 |
|
C. elegans: Strain VS24 [kat-1(tm1037)] |
CGC |
RRID:WB-STRAIN: WBStrain00040200 |
|
| Software and algorithms |
|
| ImageJ |
NIH |
RRID: SCR_003070 |
| OASIS 2 |
Han et al.41
|
https://sbi.postech.ac.kr/oasis/ |
| AutoCAD |
AutoDesk |
https://www.autodesk.com/products/autocad/overview |
| Trimmomatic version 0.39 |
Bolger et al.42
|
RRID:SCR_011848 |
| Picard (2.27.4), |
Broad Institute |
https://broadinstitute.github.io/picard/ |
| GATK (Genome Analysis Toolkit, version 4.2.6.1) |
Broad Institute |
https://gatk.broadinstitute.org/hc/en-us |
| Microfluidic Imaging and Screening Software |
This publication |
github.com/asanmiguel/AggregationScreening |
| Aggregation Image Analysis Software |
This publication |
github.com/asanmiguel/AggregationScreening |