Skip to main content
. 2022 Nov 15;23:64. doi: 10.1186/s12868-022-00745-5

Table 1.

Top 50 upregulated circRNAs between NC and CCI rats

cicName Gene symbol NC CCI Log2FoldChange p value q value
rat_circ:chr13:14728984–14734632 * 0.006613447 0.239134343 5.176275102 1.04E−05 0.000197339
rat_circ:chr8:122024123–122051181 * 0.026453788 0.327144217 3.628380535 1.08E−05 0.000204393
rat_circ:chr17:5142807–5148631 * 0.102932557 1.020292962 3.309212177 3.53E−14 1.92E-12
rat_circ:chr3:16676098–16677678 * 0.038958884 0.357541925 3.198088158 1.75E−05 0.000311119
rat_circ:chr10:83601126–83611053 * 0.048021776 0.409332141 3.091511283 5.04E−06 0.000100524
rat_circ:chr4:133073964–133096725 Shq1 0.079302196 0.557523925 2.813600993 4.06E−07 9.77E−06
rat_circ:chr6:12442152–12468485 Gtf2a1l 0.158363447 1.090678555 2.783914689 4.89E−13 2.40E−11
rat_circ:chr2:3165816–3262689 * 0.269462862 1.688134016 2.647271084 2.22E−16 1.41E−14
rat_circ:chr4:127707965–127709016 Suclg2 0.07789907 0.475982505 2.611230542 8.46E−06 0.000162135
rat_circ:chr1:207212800–207228383 Dock1 0.250908366 1.490557854 2.570619891 1.11E−15 6.95E−14
rat_circ:chr12:628708–632694 N4bp2l2 0.331660809 1.909515799 2.525426408 2.22E−16 1.41E−14
rat_circ:chr9:98293254–98296809 * 0.075039684 0.426190004 2.505771094 1.13E−05 0.000211892
rat_circ:chr6:103783216–103876906 * 0.095921747 0.536135335 2.482667387 1.41E−06 3.06E−05
rat_circ:chr9:21359002–21381023 * 0.351886506 1.877364693 2.415526836 2.22E−16 1.41E−14
rat_circ:chr13:42464681–42484505 * 0.461623763 2.428772129 2.395437745 2.22E−16 1.41E−14
rat_circ:chr17:31092766–31111405 * 0.397313897 2.017431411 2.344168464 2.22E−16 1.41E−14
rat_circ:chr18:15167501–15177828 Mapre2 0.163508464 0.825898788 2.33659967 9.67E−09 3.04E−07
rat_circ:chr1:115688753–115690048 * 0.084999051 0.422172726 2.312314733 6.00E−05 0.000921612
rat_circ:chr1:132003515–132012253 * 0.122526404 0.60044185 2.292931859 1.19E−06 2.64E−05
rat_circ:chr10:51399085–51420055 * 0.265527228 1.296441867 2.287625806 8.00E−13 3.83E−11
rat_circ:chr10:51724607–51734014 Myocd 0.158230338 0.739399801 2.224328417 2.55E−07 6.38E−06
rat_circ:chr18:13870389–13923877 Nol4 0.311141127 1.410542522 2.18060915 4.60E−13 2.27E−11
rat_circ:chr15:16089766–16170268 Fhit 0.174858821 0.791604402 2.178589054 1.11E−07 2.95E−06
rat_circ:chr10:32437291–32442282 Sgcd 0.118076637 0.53278429 2.173828 1.13E−05 0.000211892
rat_circ:chr4:129756394–129778825 * 0.173758692 0.772875498 2.153150883 1.75E−07 4.49E−06
rat_circ:chr14:94275506–94356512 * 2.000034951 8.784498579 2.134934728 0 0
rat_circ:chr10:77840596–77845575 * 0.184956873 0.804092283 2.120172172 1.87E−07 4.73E−06
rat_circ:chr3:63039411–63058267 Pde11a 0.396002984 1.710669556 2.110977899 5.55E−15 3.28E−13
rat_circ:chr7:64050812–64065194 Srgap1 0.318355006 1.35773337 2.092491836 1.96E−11 8.20E−10
rat_circ:chr17:56931036–56944178 * 0.441633884 1.843422885 2.061464294 1.78E−15 1.09E−13
rat_circ:chr8:63507502–63540694 Rec114 0.341030078 1.408824831 2.046521349 8.62E−12 3.74E−10
rat_circ:chr11:59110328–59200801 Lsamp 1.853392371 7.635218572 2.042501119 0 0
rat_circ:chr12:1509719–1512175 Rn5s 3.310525114 13.62707285 2.041343719 0 0
rat_circ:chr2:84361142–84373051 Ankrd33b 0.281535995 1.155090346 2.036614408 3.41E−10 1.28E−08
rat_circ:chr5:39149632–39157890 * 0.252422652 1.033033146 2.032973259 4.32E−09 1.41E−07
rat_circ:chr7:103024404–103123226 * 2.133991155 8.708894234 2.028935355 0 0
rat_circ:chr5:103284367–103352641 Cntln 0.135431589 0.551848363 2.026707619 2.05E−05 0.000354737
rat_circ:chr2:39818337–39845931 * 0.769099545 3.108829149 2.01512909 0 0
rat_circ:chr3:55157605–55224851 * 1.500202608 6.047257552 2.011123669 0 0
rat_circ:chr5:49097739–49187150 * 1.842693006 7.359085633 1.997710785 0 0
rat_circ:chr3:176137456–176143033 * 0.217785593 0.869089421 1.996596103 8.13E−08 2.22E−06
rat_circ:chr5:106553499–106632351 * 1.36441395 5.442020732 1.995861042 0 0
rat_circ:chr16:23448552–23492639 * 1.331199157 5.293003424 1.991360163 0 0
rat_circ:chr4:108913081–108982246 Ctnna2 1.818672104 7.064297787 1.957660702 0 0
rat_circ:chr1:25216049–25284394 Clvs2 1.338072701 5.168828573 1.949680852 0 0
rat_circ:chr8:13085939–13095295 * 0.20772817 0.799366276 1.944159836 7.24E−07 1.68E−05
rat_circ:chr8:110645275–110656857 Ephb1 0.470472499 1.808594153 1.942686405 2.98E−14 1.63E−12
rat_circ:chr7:135919861–135967388 Tmem117 1.354011654 5.136609176 1.923576153 0 0
rat_circ:chr8:130762665–130768360 Snrk 0.921667931 3.483545605 1.918237491 0 0
rat_circ:chr17:29311092–29354416 Fars2 0.834086166 3.147143806 1.915774767 0 0

Following differential expression analysis, 374 DEcircRNAs were identified between the CCI and NC groups (4 mice per group) by using FC filtering (FC ≥ 2 or ≤ 0.5) and FDR (Q < 0.001). The 50 up-regulated DEcircRNAs were listed