TABLE 1.
Major aquaculture species of finfish, crustacean, and molluscs in the world and their whole genome sequence resources.
| Species groups | Species involved | % Of world production | References of annotated genomes |
|---|---|---|---|
| Finfish | |||
| Carps (Cypriniformes) | Grass carp, silver carp, common carp, catla, bighead carp, goldfish, rohu carp, Wuchang bream, black carp, and other cyprinids | 51.1% | Xu et al. (2014); Chen et al. (2019); Liu H. et al. (2021) |
| Tilapias | Nile tilapia, blue tilapia, and other tilapia species | 10.2% | Tao et al. (2021); Conte et al. (2017) |
| Catfishes | Striped catfish, Clarias spp., yellow catfish, channel catfish | 7.5% | Liu P. et al. (2016) |
| Gong et al. (2018) | |||
| Gao et al. (2021) | |||
| Salmonids | Atlantic salmon, rainbow trout, pink salmon, chum salmon, coho salmon, sockeye salmon, Chinook salmon | 6.1% | Lien et al. (2016); Berthelot et al. (2014) |
| Milkfish | Milkfish | 2.4% | |
| All other finfishes | Flatfishes such as Atlantic halibut, Pacific halibut, Japanese flounder, half-tongue smooth; Atlantic cod | 16.4% | Chen et al. (2014); Shao et al. (2017); Star et al. (2011) |
| Crustaceans | |||
| Shrimps | Penaeus vannamei, P. monodon, P. japonicus, P. chinensis | 60.9 | Zhang et al. (2019), Uengwetwanit et al. (2021); Wang et al. (2022) |
| Red swamp crayfish | Procambarus clarkii | 18.2 | Xu et al. (2021) |
| Chinese mitten crab | Eriocheir sinensis | 8.1 | |
| Oriental river prawn | Macrobrachium nipponense and Macrobrachium rosenbergii | 5.0 | Jin et al. (2021) |
| Molluscs | |||
| Oysters | Crassostrea gigas , C. virginica | 33.2 | Zhang et al. (2012); Gómez-Chiarri et al. (2015) |
| Japanese carpet shell | Ruditapes philippinarum | 23.6 | |
| Scallops | Mizuhopecten yessoensis and various species in Pectinidae | 11.0 | Wang et al. (2017a) |
| Sea mussels | Various species in Mytilidae | 6.9 | Jin et al. (2017) |
| Constricted tagelus | Sinonovacula constricta | 4.9 | Ran et al. (2019) |
| Blood cockle | Anadara granosa | 2.5 | |
| Chilean mussel | Mytilus chilensis | 2.1 | |
Source: Food and Agricultural Organization of the United Nations (https://www.fao.org/documents/card/en/c/ca9229en/).
Bold species are those whose genome sequences have been annotated at NCBI.