Table 3.
Percent nucleotide/amino acid sequence identity of plumeria mosaic virus isolate, PluMV-Plu-Ind-1 from India with the isolate from Taiwan (PluMV-DR_TW), and with the other tobamoviruses.
| Virus | Accession no. | Complete genome | 5′ UTR | 3′ UTR | Large Rep | Small Rep | MP | CP | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| nt | aa | nt | aa | nt | aa | nt | aa | |||||
| PluMV-DR_TW | KX881422 | 98.0 | 91.1 | 99.2 | 97.9 | 98.7 | 97.7 | 98.6 | 98.3 | 98.8 | 99 | 100 |
| FrMV-Ind-1 | JN555602 | 71.4 | 48.3 | 85.2 | 68.8 | 75.2 | 67.1 | 72.3 | 79.5 | 85.9 | 78.7 | 86.2 |
| FrMV-P | HM026454 | 71.6 | 49.4 | 85.5 | 69.1 | 75.3 | 67.3 | 72.2 | 79.5 | 86.3 | 78.5 | 85.7 |
| Fr-Adel | AF165884 | – | – | 85.5 | – | – | – | – | 79.1 | 84.7 | 79.5 | 86.2 |
| BrMMV | AM398436 | 45.4 | 27.1 | 31.0 | 48.6 | 41.1 | 44.2 | 36.1 | 36.7 | 23.9 | 44.6 | 37.1 |
| BPMoV | DQ355023 | 45.2 | 30.4 | 29.2 | 48.2 | 41.6 | 44.4 | 37.0 | 37.3 | 23.7 | 43.6 | 38.9 |
| CFMMV | AF321057 | 48.7 | 33.6 | 30.9 | 48.7 | 41.6 | 47.2 | 37.4 | 46 | 29.4 | 44.0 | 33.1 |
| CGMMV | D12505 | 48.0 | 23.9 | 28.5 | 48.5 | 42.7 | 47.3 | 38.4 | 45.3 | 32.5 | 47.2 | 36.5 |
| ClYMV | JN566124 | 44.4 | 30.4 | 34.6 | 48.0 | 42.7 | 44.6 | 39.0 | 33.1 | 21.4 | 44.4 | 36.5 |
| CMMoV | EU043335 | 43.9 | 19.5 | 31.5 | 45.9 | 38.5 | 42.9 | 34.0 | 32.6 | 23.4 | 39.0 | 29.9 |
| CuMoV | AB261167 | 48.8 | 27.1 | 28.3 | 49.0 | 43.4 | 47.8 | 38.9 | 45.1 | 32.4 | 47.8 | 38.8 |
| HLFPV | FJ196834 | 47.2 | 19.5 | 23.5 | 51.1 | 44.1 | 46.9 | 39.9 | 38.3 | 24.5 | 47.8 | 40.0 |
| HLSV | AF395898 | 46.0 | 23.9 | 26.6 | 49.7 | 44.3 | 47.0 | 41.5 | 38.7 | 24.0 | 46.1 | 39.4 |
| KGMMV | AJ295948 | 48.1 | 32.6 | 24.3 | 48.0 | 42.2 | 46.3 | 38.0 | 44.5 | 29.4 | 43.6 | 34.2 |
| MarMV | DQ356949 | 40.8 | 14.1 | 27.4 | 45.9 | 41.6 | 44.6 | 39.4 | 33.4 | 19.0 | 45.5 | 37.1 |
| NTLV | AY137775 | - | - | - | - | - | - | - | 38.3 | 25.2 | 45.0 | 37.2 |
| ObPV | D13438 | 43.5 | 27.4 | 41.5 | 47.4 | 41.4 | 42.9 | 36.0 | 38.3 | 23.7 | 40.1 | 37.8 |
| ORSV | X82130 | 42.8 | 22.8 | 26.9 | 47.0 | 39.1 | 43.0 | 34.7 | 35.1 | 20.4 | 41.8 | 37.2 |
| PaMMV | AB089381 | 44.4 | 29.6 | 33.2 | 47.7 | 41.6 | 43.4 | 36.5 | 37.6 | 25.6 | 43.7 | 37.8 |
| PFMV | HQ389540 | 40.7 | 16.3 | 29.2 | 48.6 | 42.7 | 43.8 | 39.4 | 32.7 | 20.3 | 46.7 | 34.8 |
| PMMoV | M81413 | 45.6 | 27.4 | 28.9 | 48.3 | 41.9 | 44.1 | 36.9 | 39.3 | 26.2 | 44.0 | 40.6 |
| RaCNaV | JF729471 | 44.3 | 43.3 | 27.6 | 46.6 | 40.4 | 42.8 | 35.7 | 31.0 | 18.8 | 41.1 | 27.4 |
| RehMV | AB628188 | 46.3 | 33.6 | 31.0 | 49.0 | 42.5 | 44.7 | 37.1 | 35.9 | 22.7 | 47.8 | 41.2 |
| RMV | HQ667979 | 45.4 | 25.0 | 31.7 | 49.0 | 42.3 | 44.4 | 38.0 | 38.6 | 22.8 | 42.3 | 37.8 |
| SFBV | AM040955 | 44.9 | 26.0 | 26.4 | 48.8 | 42.2 | 44.1 | 37.1 | 36.5 | 23.3 | 37.4 | 32.2 |
| SHMV | MW057697 | 45.4 | 28.2 | 39.1 | 48.6 | 42.1 | 45.3 | 38.1 | 33.9 | 23.7 | 47.6 | 40.1 |
| TBRFV | KT383474 | 45.5 | 34.7 | 32.0 | 48.3 | 42.0 | 44.0 | 36.7 | 36.6 | 22.7 | 47.0 | 41.8 |
| TMGMV | M34077 | 46.1 | 33.6 | 31.3 | 49.5 | 41.4 | 45.0 | 37.4 | 39.8 | 25.7 | 45.1 | 39.5 |
| TMV | AJ011933 | 45.6 | 32.6 | 31.3 | 48.5 | 42.3 | 43.9 | 37.0 | 35.8 | 21.6 | 45.7 | 41.2 |
| ToMV | X02144 | 45.9 | 31.5 | 31.3 | 48.9 | 42.5 | 44.5 | 37.5 | 36.7 | 23.0 | 44.4 | 40.1 |
| ToMMV | KF477193 | 45.9 | 33.6 | 29.2 | 49.0 | 42.3 | 44.1 | 37.4 | 39.2 | 22.3 | 45.9 | 40.1 |
| TSAMV | KU659022 | 45.2 | 28.5 | 27.8 | 48.2 | 41.2 | 44.2 | 36.5 | 39.7 | 27.1 | 44.0 | 38.4 |
| TVCV | U03387 | 45.5 | 25.0 | 30.6 | 49.1 | 42.3 | 44.5 | 37.4 | 38.6 | 21.7 | 43.6 | 38.9 |
| WMoV | KJ207375 | 45.1 | 26.0 | 30.3 | 48.8 | 42.3 | 44.2 | 37.2 | 38.4 | 23.9 | 43.8 | 37.2 |
| YoMV | AB261175 | 45.3 | 26.0 | 29.8 | 49.0 | 42.5 | 44.8 | 38.0 | 39.6 | 23.4 | 42.3 | 38.4 |
| YTMMV | KF495564 | 45.5 | 31.8 | 25.0 | 49.1 | 41.9 | 44.5 | 36.2 | 37.0 | 24.6 | 41.9 | 34.8 |
| ZGMMV | AJ295949 | 48.5 | 29.3 | 24.6 | 48.4 | 42.1 | 46.6 | 37.8 | 45.7 | 29.4 | 46.5 | 36.0 |
FrMV, Frangipani mosaic virus; BrMMV, Brugmansia mild mottle virus; BPMoV, Bell pepper mottle virus; CFMMV; Cucumber fruit mottle mosaic virus; CGMMV, Cucumber green mottle mosaic virus; ClYMV, Clitoria yellow mottle virus; CMMoV, Cactus mild mottle virus; CuMoV, Cucumber mottle virus; HLFPV, Hibiscus latent fort pierce virus; HLSV, Hibiscus latent Singapur virus; KGMMV, Kyuri green mottle mosaic virus; MarMV, Maracuja mosaic virus; NTLV, Nigerian tobacco latent virus; ObPV, Obuda pepper virus; ORSV, Odontoglossum ringspot virus; PaMMV, Paprika mild mottle virus; PFMV, Passion fruit mosaic virus; PMMoV, Pepper mild mottle virus; RaCNaV, Rattail cactus necrosis-associated virus; RehMV, Rehmannia mosaic virus; RMV, Ribgrass mosaic virus; SFBV, Streptocarpus flower break virus; SHMV, Sunn-hemp mosaic virus; TBRFB, Tomato brown rugose fruit virus; TMGMV, Tobacco mild green mosaic virus; TMV, Tobacco mosaic virus; ToMV, Tomato mosaic virus; ToMMV, Tomato mottle mosaic virus; TSAMV, Tropical soda apple mosaic virus; TVCV, Turnip vein clearing virus; WMoV, Wasabi mottle virus; YoMV, Youcai mosaic virus; YTMMV, Yellow tailflower mild mottle virus; ZGMMV, Zucchini green mottle mosaic virus; −, not available; UTR, Untranslated region; Rep, Replicase; MP, Movement protein; CP, Coat protein