REAGENT or RESOURCE	SOURCE	IDENTIFIER
Biological samples
Osteological remain	This study	Gazel4
Osteological remain	This study	BBB001
Osteological remain	This study	BBB002
Osteological remain	This study	BBB003_6
Osteological remain	This study	BBB004
Osteological remain	This study	BBB008
Osteological remain	This study	BBB009
Osteological remain	This study	BBB014
Osteological remain	This study	SP193
Osteological remain	This study	SP237
Osteological remain	This study	SP249
Osteological remain	This study	CRE11C
Osteological remain	This study	CRE14
Osteological remain	This study	CRE20B
Osteological remain	This study	CRE20D
Osteological remain	This study	BOU1
Osteological remain	This study	BOU3
Osteological remain	This study	BOU4
Osteological remain	This study	BOU5
Osteological remain	This study	BOU6
Osteological remain	This study	BOU7
Osteological remain	This study	BOU9
Osteological remain	This study	BOU10
Osteological remain	This study	BOU11
Osteological remain	This study	BOU14
Osteological remain	This study	FAD1
Osteological remain	This study	FAD3
Osteological remain	This study	FAD10
Chemicals, peptides, and recombinant proteins
Proteinase K 100MG	Sigma Aldrich	P2308-100MG
EDTA	Invitrogen	10135423
Guanidinium chloride	Sigma Aldrich	G3272-500g
Sodium Acetate	Invitrogen	AM9740
H2O	Dutscher	33311
Ethanol Absolute	Vwr	8187602500
Tween 20	Sigma Aldrich	11332465001
dNTP Set	Dutscher	755086
BSA, Molecular Biology Grade	New England Biolabs Cat# B9000S	B9000 S
Adenosine 5′-Triphosphate (ATP)	New England Biolabs	P0756 S
Buffer PE	Qiagen	19065
Buffer EBT	Qiagen	19086
Buffer QG	Qiagen	19063
iso-propanol	Vwr	1009952500
5M Sodium Chloride	Sigma Aldrich	S7899-500ML
NEBNext® End Repair Module	New England Biolabs	E6050L
NEBNext® Quick Ligation Module	New England Biolabs	E6056L
OneTaq 2X Master Mix with Standard Buffer	New England Biolabs	M0484L
Silica magnetic beads	Invitrogen	10099482
Phusion High-Fidelity DNA Polymerase	New England Biolabs	M0530L
USER Enzyme	New England Biolabs	M5505L
Critical commercial assays
MinElute PCR Purification kit	Qiagen	28004
Qubit dsDNA HS Assay Kit	Thermo Fisher Scientific	Q32851
NextSeq 500/550 High Output Kit v2.5 (150 Cycles)	Illumina	20024907
Agilent High Sensitivity DNA Kit	Agilent	5067-4626
Deposited data
Raw and analyzed data	This Study	ENA project : PRJEB50995
Software and algorithms
READ	Monroy Kuhn et al. (2018)	https://bitbucket.org/tguenther/read/src/master/
TKGWV2	Fernandes et al. (2021)	https://github.com/danimfernandes/tkgwv2
Admixtools	Patterson et al. (2012)	https://github.com/DReichLab/AdmixTools
DATES	Narasimhan et al. (2019); Chintalapati et al. (2022)	https://github.com/priyamoorjani/DATES
EAGER	Peltzer et al., 2016	https://github.com/nf-core/eager
ANGSD	Korneliussen et al. (2014)	https://github.com/ANGSD/angsd
ContamMix	Fu et al. (2013)
Haplogrep	Weissensteiner et al. (2016)	https://github.com/seppinho/haplogrep-cmd
Yleaf	Ralf et al. (2018)	https://github.com/genid/Yleaf
smartPCA	Patterson et al. (2006)	https://github.com/chrchang/eigensoft
HapROH	Ringbauer et al. (2021)	https://github.com/hringbauer/hapROH