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| Program | Version |
|---|---|
| HTSEQ | htseq/HTSeq-0.5.3 |
| PICARD | picard/picard-tools-1.124 |
| R | R/R-3.2.0 |
| STAR | star/STAR-STAR_2.5.0a |
| SAMTOOLS | samtools/samtools-0.1.19 |