TABLE 4.
Numbers of simple trinucleotide repeats identified in GSSsa
| Trinucleotide | GSSs (no. of trinucleotide repeats present) |
|---|---|
| AAT | 0149b (4), 0210a (4), 0217a (4), 0223a (4), 0307a (4), 0488a (4), 0342a (5), 0307b (6), 0143b (7), 0107a (8), 0200a (9) |
| TAA | 0149b (4), 0217a (4), 0307a (4), 0342a (4), 0488a (4), 0307b (5), 0143b (6), 0107a (7), 0200a (8) |
| TAT | 0012b (4), 0047a (4), 0186b (4), 0171a (5), 0205a (5), 0230b (5), 0348a (5), 0371a (5), 0441a (7) |
| ATA | 0217a (4), 0307a (4), 0342 (4), 0149b (5), 0307b (5), 0143b (7), 0107a (8), 0200a (8) |
| TTA | 0017b (4), 0186b (4), 0205a (4), 0171a (5), 0230b (5), 0371a (5), 0348a (6), 0441a (7) |
| ATT | 0012b (4), 0186b (4), 0205a (4), 0171a (5), 0230b (5), 0348a (5), 0371a (6), 0441a (7) |
| CTT | 0183b (4), 0246a (4), 0090b (5), 0145a (6) |
| TTC | 0183b (4), 0246a (4), 0090b (5), 0145a (6) |
| ATG | 0102a (4), 0173a (4), 0342a (4) |
| TGA | 0102a (4), 0173a (4), 0342a (4) |
| TCA | 0102b (5), 0173b (6), 0342a (7) |
| GAT | 0102a (4), 0173a (4), 0342a (5) |
| TCT | 0090b (4), 0246a (4), 0145a (5) |
| CAT | 0102b (4), 0173b (5), 0342a (7) |
| ATC | 0102b (5), 0173b (6), 0342a (8) |
| CCT | 0145a (4), 0368a (5) |
| GAG | 0347a (4) |
| AGG | 0347a (4) |
| TAG | 0090b (15) |
| TTG | 0327a (4) |
| CTG | 0426a (4) |
| GGA | 0347a (4) |
| GTA | 0090b (14) |
| CTA | 0090a (7) |
| GCT | 0426a (4) |
| AGT | 0090b (15) |
| ACT | 0090a (7) |
| TGC | 0426a (4) |
| TAC | 0090a (7) |
| TCC | 0368a (6) |
| CTC | 0368a (5) |
a
C. parvum GSSs were searched for all possible trinucleotide repeats containing more than three repeat units by using the FINDPATTERNS program (GCG). No mismatches were allowed. The number of repeats in each sequence is shown in parentheses. More than three repeats of GTG, GCG, AAG, ACG, TGG, TCG, CGG, CAG, CCG, GAA, GCA, AGA, ACA, CGA, CAA, CCA, GGT, GTT, TGT, CGT, GGC, GAC, GTC, GCC, AGC, AAC, ACC, CGC, and CAC were not found.