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. 2022 Oct 19;611(7936):519–531. doi: 10.1038/s41586-022-05325-5

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© The Author(s) 2022

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 2 — a, Percent assembly sizes of expected maternal with Chr X (3,054,832,041 bp) or paternal with Y (2,995,432,041 bp) for trio-based assemblies, or simply relative to maternal size for all other assemblies. b, Total summed length of all contigs. c, Total summed length of scaffolds, with proportion contributed by Ns (red) in gaps. d, estimated percent of assembly size that is due to false duplications based on k-mer values for each haplotype. Color coding and gray shaded regions are as described in Fig. 1.