Table 3.
Imprinted gene over-representation in neural lineage types [29]
| Cell Population Identity (Abbr.) | Up Reg (14,498) |
IG (85) |
ORA p | ORA q | Mean FC IG |
Mean FC Rest |
GSEA p | GSEA q | No. IGs with highest expression |
|---|---|---|---|---|---|---|---|---|---|
| Neuroendocrine cells (NendC) | 3868 | 47 | 2.12E-08 | 3.82E-07 | 11.88 | 5.42 | 0.0017 | 0.0051 | 26 |
| Mature Neurons (all types) (mNEUR) | 2968 | 32 | 0.0002 | 0.0035 | 8.80 | 9.28 | - | - | 2 |
| Arachnoid barrier cells (ABC) | 2287 | 20 | 0.0396 | 0.7120 | 16.84 | 22.63 | - | - | 7 |
| Tanycytes (TNC) | 1279 | 12 | 0.0692 | 1 | 6.64 | 12.01 | - | - | 8 |
| Vascular and leptomeningeal cells (VLMC) | 1714 | 15 | 0.0724 | 1 | 15.06 | 13.03 | 0.0468 | 0.1404 | 4 |
| Oligodendrocyte precursor cells (OPC) | 1524 | 13 | 0.1067 | 1 | 3.03 | 7.17 | - | - | 1 |
| Pericytes (PC) | 1801 | 14 | 0.1649 | 1 | 8.20 | 8.22 | - | - | 2 |
| Olfactory ensheathing glia (OEG) | 1086 | 9 | 0.1848 | 1 | 7.95 | 26.03 | - | - | 1 |
| Oligodendrocytes (OLG) | 1183 | 9 | 0.2561 | 1 | 3.73 | 12.91 | - | - | 5 |
| Choroid plexus epithelial cells (CPC) | 2602 | 17 | 0.3524 | 1 | 7.43 | 19.34 | - | - | 5 |
| Hemoglobin-expressing vascular cells (Hb_VC) | 1798 | 11 | 0.4889 | 1 | 5.25 | 6.33 | - | - | 3 |
| Vascular smooth muscle cells (VSMC) | 3006 | 17 | 0.6093 | 1 | 8.94 | 6.71 | 0.1376 | 0.4128 | 5 |
| Astrocyte-restricted precursors (ARP) | 1445 | 8 | 0.6214 | 1 | 4.50 | 5.09 | - | - | 1 |
| Neural stem cells (NSC) | 1009 | 5 | 0.7138 | 1 | 4.00 | 4.09 | - | - | 0 |
| Ependymocytes (EPC) | 3233 | 17 | 0.7346 | 1 | 15.04 | 53.27 | - | - | 4 |
| Endothelial cells (EC) | 1455 | 7 | 0.7619 | 1 | 5.80 | 8.54 | - | - | 0 |
| Hypendymal cells (HypEPC) | 1525 | 6 | 0.8946 | 1 | 17.24 | 20.80 | - | - | 5 |
| Neuronal-restricted precursor (NRP) | 2339 | 10 | 0.8979 | 1 | 3.07 | 10.20 | - | - | 1 |
| Astrocytes (ASC) | 1384 | 4 | - | - | 2.22 | 6.04 | - | - | 0 |
| Dendritic cells (DC) | 1209 | 1 | - | - | 3.50 | 16.02 | - | - | 1 |
| Immature Neurons (ImmN) | 652 | 4 | - | - | 3.37 | 5.79 | - | - | 0 |
| Macrophages (MAC) | 1222 | 2 | - | - | 3.47 | 21.56 | - | - | 0 |
| Microglia (MG) | 1342 | 3 | - | - | 19.28 | 19.22 | - | - | 3 |
| Monocytes (MNC) | 947 | 2 | - | - | 16.49 | 19.13 | - | - | 1 |
| Neutrophils (NEUT) | 519 | 2 | - | - | 9.18 | 62.13 | - | - | 0 |