Table 2.
Templates for virus-host interaction pathways.
| Template name | Template description* |
|---|---|
| P1 | Vp – PPI – > Kp |
| P2 | Vp – PPI – > Hp – PPI – > Kp |
| P3 | Vp – PPI – > Hp – Act/Stab/Pr/PPM/Tr – > Kp |
| P4 | Vp – PPI – > Hp – Exp reg – > Kg – Exp – > Kp |
| P5 | Vp – PPI – > Hp – Expreg– > Hg – Exp– > Hp– Expreg– > Kg – Exp– > Kp |
| P6 | Vp – PPI – > Hp – Exp reg – > Hg – Exp – > Hp – Act/Stab/Pr/PPM/Tr – > Kp |
| P7 | Vp – PPI – > Hp – Expreg– > Hg – Exp– > Hp – PPI – > Kp |
Interactions: PPI protein–protein interactions, Act/Stab/Pr/PPM/Tr regulation of activity or stability, or proteolysis, or post translational modifications, or transport (release). Exp reg regulation of gene expression. Exp gene expression (protein production).
*Objects: Vp SARS-CoV2 proteins, Kp KEGG metabolic pathway proteins, Kg KEGG metabolic pathway genes, Hp any host proteins inv olved in the interactions, Hg any host genes involved in the interactions.