Table 3.
Actin-detecting probes.
| Probe | Description | Mechanisms | Pitfalls |
|---|---|---|---|
| Actin-chromobody [259] | A DNA plasmid encoding an anti-actin VHH nanobody fused to a fluorescent protein. | Fluorescent-labeled nanobody labels endogenous actin by antigen-antibody reaction. | High background when transient transfected into cells. Signal quenching after cell fixation. |
| Actin-GFP [260] | A DNA plasmid encoding human actin fused to GFP. | Ectopic expression of fluorescent-labeled actin into cells. | Interfere with the physiological actin dynamics. |
| F-tractin [261] | A DNA plasmid encoding N-terminus 10–52 AA peptides of rat inositol-trisphosphate 3-kinase (Itpk) [262]. | Itpk has a F-actin specifically binding domain at the N-terminus 1–66 AA region [263]. | Inhibit ABPs binding to F-actin. |
| Lifeact [264] | A DNA plasmid encoding N-terminus 1–17 AA peptides of yeast ABP140 [265]. | Lifeact binds to G-actin with an affinity 10-fold higher than F-actin. | Alter F-actin organization [266]. |
| Phalloidin [267] | Bicyclic heptapeptide from death cap mushroom. | Phalloidin specifically binds at the interface between subunits of F-actin, locking the F-actin structure and preventing depolymerization. | Prevent F-actin depolymerization. Cytotoxicity. |
| SiR-actin [268] | Silicon-rhodamine (SiR) conjugated to desbromo-desmethyl-jasplakinolide. | SiR is a fluorophore [269]. Jasplakinolide binds at the interface of G-actin oligomers at the nucleation phase [270, 271]. | Enhance F-actin polymerization. Cytotoxicity. |
| SPY-actin | Improved version of the SiR-actin by utilizing SPY dyes instead of SiR. | ||
| UtrCH [272] | A DNA plasmid encoding N-terminus 1–261 AA peptides of human utrophin. | The N-terminus of utrophin has calponin-homology (CH) domains, which specifically binds to F-actin [273]. | Alter F-actin organization. |