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. Author manuscript; available in PMC: 2023 Nov 17.
Published in final edited form as: Mol Cell. 2022 Oct 28;82(22):4232–4245.e11. doi: 10.1016/j.molcel.2022.10.004
Cell line/Condition Antibody Total reads Deduplicated reads mapping to mm10 Reads mapping to dm3 Depth norm. factor Background signal Spike norm. factor Agreement between replicates (Pearson’s r)
F121–9 Replicate 1 INTS11 45,087,205 32,978,564 N/A N/A N/A N/A >0.99
F121–9 Replicate 2 INTS11 52,171,958 38,321,645
INTS11Halo/DMSO Replicate 1 INTS11 131,202,996 62,935,010 41,926 1.16 0.176 1.00 >0.99
INTS11Halo/DMSO Replicate 2 INTS11 109,944,866 56,793,447 38,042 1.05
INTS11Halo/PROTAC Replicate 1 INTS11 143,158,380 69,687,029 60,305 1.28 0.175 1.54 >0.99
INTS11Halo/PROTAC Replicate 2 INTS11 109,126,747 54,239,223 64,980 1.00
INTS11Hato/DMSO Replicate 1 INTS3 145,129,425 72,736,187 39,670 1.71 0.135 1.22 >0.99
INTS11Halo/DMSO Replicate 2 Replicate 2 INTS3 105,573,272 56,348,152 29,408 1.32
INTS11Halo/PROTAC Replicate 1 INTS3 125,956,094 63,665,886 26,854 1.49 0.136 1.00 >0.99
INTS11Halo/PROTAC Replicate 2 INTS3 79,847,597 42,651,940 19,176 1.00