TABLE 1.
CDSs identified on the 119-kb chromosomal sequence of Y. pestis 6/69M
| CDSa designation | Size (aab residues) | Homologue as determined by FASTA | % Identity (aab overlap) |
|---|---|---|---|
| yp1 | 268 | GumP (X. campestris) | 33.7 (252) |
| yp2 | 338 | Oxidoreductase (E. coli) | 44.4 (331) |
| yp3c | 175 | GumO (X. campestris), C end | 39.5 (172) |
| yp3′c | 169 | GumO (X. campestris), N end | 38.9 (149) |
| yp4 | 658 | Anthranilate synthase (M. tuberculosis) | 34.3 (450) |
| yp5 | 190 | Hypothetical protein (E. coli) | 38.5 (179) |
| yp6 | 456 | Atrazine chlorohydrolase h. (M. xanthus) | 36.6 (421) |
| hutC | 255 | HutC (P. putida) | 63.2 (242) |
| hutI | 406 | HutI (P. putida) | 54.2 (408) |
| hutG | 268 | HutG (P. putida) | 59.6 (260) |
| ′yp7cd | 50 | OmpF (S. marcescens), C end | 66.0 (50) |
| IS100 | 259 | IS100 transposase (Y. pestis) | 100 (259) |
| IS100 | 340 | IS100 transposase (Y. pestis) | 100 (340) |
| yp7′c | 315 | OmpF (S. marcescens), N end | 58.0 (299) |
| aruE | 330 | AruE (P. aeruginosa) | 38.1 (322) |
| aruB | 447 | AruB (P. aeruginosa) | 60.8 (446) |
| aruD | 505 | AruD (P. aeruginosa) | 63.5 (491) |
| aruF | 350 | AruF (P. aeruginosa) | 52.9 (344) |
| aruC | 414 | AruC (P. aeruginosa) | 58.9 (416) |
| yp8 | 473 | Tyrosine aminotransferase (E. coli) | 56.8 (465) |
| yp9 | 593 | NarX (E. coli) | 47.9 (595) |
| chaA | 366 | Calcium/proton antiporter ChaA (E. coli) | 78.4 (356) |
| phoH | 262 | Phosphate starvation-inducible PhoH (E. coli) | 91.2 (262) |
| yp10 | 299 | Hypothetical protein (S. cerevisiae) | 42.6 (230) |
| hmsS | 155 | HmsS (Y. pestis KIM6+) | 100 (155) |
| hmsR | 457 | HmsR (Y. pestis KIM6+) | 99.8 (457) |
| hmsF | 673 | HmsF (Y. pestis KIM6+) | 96.9 (673) |
| hmsH | 822 | HmsH (Y. pestis KIM6+) | 100 (822) |
| yp11 | 405 | Proline peptidase (B. subtilis) | 25.7 (390) |
| tehB | 295 | Tellurite resistance protein (E. coli) | 61.3 (191) |
| yp12 | 104 | Cytochrome c553 precursor (D. vulgaris) | 29.8 (104) |
| yp13 | 165 | ResA (B. subtilis) | 28.8 (132) |
| yp14 | 237 | ABC transporter (E. coli) | 44.0 (225) |
| yp15 | 387 | Integral membrane protein (B. subtilis) | 22.9 (385) |
| yp16 | 430 | ABC transporter (E. coli) | 22.6 (442) |
| yp17 | 469 | H+-transporting ATPase (A. castellanii) | 26.7 (225) |
| yp18 | 175 | Membrane antigen precursor (T. pallidum) | 40.0 (170) |
| yp19 | 639 | Unknown | |
| yp20 | 546 | YfiU (B. subtilis) | 25.3 (538) |
| yp21 | 340 | Putative glutaminase (E. coli) | 42.5 (306) |
| yp22 | 256 | DeoR family, transcription regulator (B. subtilis) | 61.9 (252) |
| ansP | 508 | l-Asparagine permease (E. coli) | 79.6 (489) |
| yp23 | 386 | Aminotransferase (S. solfataricus) | 33.1 (393) |
| yp24 | 199 | NADH-ubiquinone oxidoreductase (H. influenzae) | 69.0 (197) |
| yp25 | 320 | LysR family, transcription regulator (E. coli) | 27.0 (293) |
| yp26 | 289 | Unknown | |
| yp27 | 409 | Transport protein (R. eutropha) | 44.2 (407) |
| yp28 | 186 | Unknown | |
| yp29 | 157 | Unknown | |
| yp30 | 294 | LysR family, transcription regulator (E. coli) | 40.8 (289) |
| yp31 | 280 | Citrate lyase beta-chain (E. coli) | 32.0 (291) |
| yp32 | 180 | Regulatory protein (M. tuberculosis) | 45.1 (173) |
| yp33 | 440 | 4-Hydroxybutyrate coenzyme A transferase (C. kluyveri) | 40.0 (440) |
| yp34 | 210 | BvgA (B. pertussis), FimZ (E. coli) | 48.3 (207) |
| yp35′c | 464 | BvgS, sensor protein (B. pertussis), N end | 26.3 (437) |
| ′yp35c | 803 | BvgS, sensor protein (B. pertussis, C end | 30.9 (783) |
| yp36 | 176 | Pilin precursor (E. coli) | 37.9 (177) |
| yp37 | 214 | HifB, periplasmic chaperone (H. influenzae) | 30.7 (228) |
| yp38 | 863 | FocD, outer membrane usher protein (E. coli) | 29.8 (857) |
| yp39 | 449 | HifA (H. influenzae) | 27.8 (187) |
| yp40 | 246 | F17d-D, chaperone (E. coli) | 33.1 (248) |
| asn tRNA | 88 | Asparagine tRNA synthetase (Y. pseudotuberculosis) | 100 (88) |
| int | 420 | Int (Y. pseudotuberculosis) | 100 (420) |
| IntB, p rophage P4 integrase (E. coli) | 54.1 (390) | ||
| Int, bacteriophage P4 | 49.5 (420) | ||
| ybtS | 434 | YbtS (Y. pestis KIM6+) | 100 (434) |
| ybtX | 462 | YbtX (Y. pestis KIM6+) | 100 (462) |
| ybtQ | 600 | YbtQ (Y. pestis KIM6+) | 100 (600) |
| ABC transporter, (M. tuberculosis) | 32.5 (587) | ||
| ybtP | 600 | YbtP (Y. pestis KIM6+) | 99.8 (600) |
| ABC transporter (M. tuberculosis) | 35.7 (577) | ||
| ybtA | 319 | YbtA AraC type regulator (Y. pestis KIM6+) | 100 (319) |
| irp2 | 2,041 | HMWP2 (Y. pestis KIM6+) | 100 (2041) |
| irp1 | 3,163 | HMWP1 (Y. pestis KIM6+) | 100 (3163) |
| ybtU | 365 | YbtU (Y. pestis KIM6+) | 100 (365) |
| Irp3 (Y. enterocolitica) | 97.8 (365) | ||
| ybtT | 267 | YbtT (Y. pestis KIM6+) | 100 (267) |
| ybtE | 525 | YbtE (Y. pestis KIM6+) | 100 (525) |
| psn | 673 | Psn, pesticin receptor (Y. pestis KIM6+) | 100 (673) |
| yp41 | 140 | Unknown | |
| yp42 | 168 | Unknown | |
| yp43 | 61 | ORF 88 (bacteriophage P4) | 36.1 (61) |
| yp44 | 54 | Unknown | |
| yp45 | 193 | Unknown | |
| yp46 | 69 | ORF 82 (bacteriophage P2), DNA-binding protein | 31.9 (69) |
| TraR (E. coli) | 33.8 (68) | ||
| yp47 | 59 | Hha, hemolysin expression modulator (E. coli) | 33.8 (57) |
| YmoA, modulating virulence expression | 35.8 (53) | ||
| IS100 | 259 | IS100 transposase (Y. pestis) | 100 (259) |
| IS100 | 355 | IS100 transposase (Y. pestis) | 100 (355) |
| ′yp48c | 113 | MalK C-terminal (E. coli) | 33.3 (87) |
| yp48′c | 296 | MalK N-terminal (E. coli) | 59.6 (265) |
| yp49 | 275 | MalG (E. coli) | 35.3 (266) |
| yp50 | 286 | ABC transporter (Rhizobium sp.) | 37.6 (269) |
| yp51 | 422 | ABC transporter (Sinorhizobium fredii) | 26.7 (419) |
a
Coding sequence.
b
aa, amino acid.
c
Designates an interrupted coding sequence.
d
yp7 is also highly similar to the E. coli PhoE protein.