Table 2.
MHC-I and MHC-II identified epitopes for native and mutant Spikes.
| MHC type | Position | Sequence | Score |
|---|---|---|---|
| MHC-I (N) | 19 | TTRTQLPPA | 0.00121 |
| 452 | VGGNYNYLY | 0.094173 | |
| 478 | TPCNGVEGF | 0.002697 | |
| 614 | YQDVNCTEV | 0.037062 | |
| 681 | QTQTNSPRR | 0.007383 | |
| 950 | LQDVVNQNA | 0.005013 | |
| MHC-I (M) | 19 | RTRTQLPPA | 0.001245 |
| 452 | VGGNYNYRY | 0.060056 | |
| 478 | KPCNGVEGF | 0.001792 | |
| 614 | YQGVNCTEV | 0.000966 | |
| 681 | QTQTNSRRR | 0.003453 | |
| 950 | LQNVVNQNA | 0.000489 | |
| MHC type | Position | Sequence | Percentile rank |
|---|---|---|---|
| MHC-II (N) | 19 | QCVNLTTRTQLPPAY | 44 |
| 452 | YLYRLFRKSNLKPFE | 26 | |
| 478 | FERDISTEIYQAGST | 35 | |
| 614 | NQVAVLYQDVNCTEV | 28 | |
| 681 | GAGICASYQTQTNSP | 52 | |
| 950 | LGKLQDVVNQNAQAL | 30 | |
| MHC-II (M) | 19 | QCVNLRTRTQLPPAY | 51 |
| 452 | YRYRLFRKSNLKPFE | 26 | |
| 478 | FERDISTEIYQAGSK | 35 | |
| 614 | NQVAVLYQGVNCTEV | 65 | |
| 681 | GAGICASYQTQTNSR | 41 | |
| 950 | LQNVVNQNAQALNTL | 33 |
N: native; M: mutant.