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. 2022 Nov 23;12:20232. doi: 10.1038/s41598-022-22217-w

Table 2.

Type of interactions, interacting residues and bond distance of scytalone dehydratase (1STD), trihydroxynaphthalene reductase (1YBV), trehalose-6-phosphate synthase 1 or Tps1 (6JBI) and isocitrate lyase enzyme (5E9G) with their best binding energy compound.

Compounds Interacting amino acid residues Bond distance (Å) Interaction category Type of interaction
1YBV vs. Camptothecin A:ALA171 4.30500 Hy Bond Pi-Alkyl
A:VAL172 4.42792 Hy Bond Alkyl
A:PRO173 4.36460 Hy Bond Alkyl
A:PRO173 3.91795 Hy Bond Pi-Alkyl
A:PRO173 4.56089 Hy Bond Pi-Alkyl
A:TYR223 5.01426 Hy Bond Pi-Alkyl
A:ILE224 4.77982 Hy Bond Amide-Pi Stacked
A:ILE224 4.82795 Hy Bond Amide-Pi Stacked
A:PRO225 3.83534 Hy Bond Alkyl
A:PRO225 5.29914 Hy Bond Pi-Alkyl
A:PRO225 4.40528 Hy Bond Pi-Alkyl
A:PRO225 4.02346 Hy Bond Pi-Alkyl
A:TYR238 2.88848 H Bond Conventional H Bond
A:TRP243 3.02142 H Bond Conventional H Bond
A:TRP243 4.71108 Hy Bond Pi-Alkyl
A:TRP243 4.90207 Hy Bond Pi-Alkyl
A:MET283 3.97625 Hy Bond Alkyl
1STD vs. Camptothecin A:TYR30 3.03114 H Bond Conventional H Bond
A:TYR50 2.83592 H Bond Carbon H Bond
A:TYR50 4.5893 Hy Bond Pi-Alkyl
A:PHE53 5.47049 Hy Bond Pi-Alkyl
A:LEU54 5.42091 Hy Bond Pi-Alkyl
A:VAL75 4.62589 Hy Bond Pi-Alkyl
A:VAL108 3.99317 Hy Bond Alkyl
A:HIS110 4.60518 Hy Bond Pi-Alkyl
A:ALA127 3.55428 Hy Bond Alkyl
A:ILE151 4.5329 Hy Bond Alkyl
A:PHE158 4.45972 Hy Bond Pi-Alkyl
A:ARG166 5.48424 Hy Bond Pi-Alkyl
5E9G vs. GKK1032A2 A:TRP440 3.68425 Hy Bond Pi-Pi Stacked
A:GLN449 2.43557 H Bond Conventional H Bond
A:ILE466 5.34579 Hy Bond Alkyl
A:ALA469 3.86322 Hy Bond Alkyl
6JBI vs. GKK1032A2 A:HIS112 2.85945 H Bond Conventional H Bond
A:HIS181 4.11942 Hy Bond Pi-Alkyl
A:THR182 2.98721 H Bond Carbon H Bond
A:LYS294 3.46775 H Bond Pi-Donor H Bond
A:MET390 2.68059 H Bond Conventional H Bond
A:LEU392 4.47259 Hy Bond Alkyl

H hydrogen, Hy hydrophobic.