Table 2.
Type of interactions, interacting residues and bond distance of scytalone dehydratase (1STD), trihydroxynaphthalene reductase (1YBV), trehalose-6-phosphate synthase 1 or Tps1 (6JBI) and isocitrate lyase enzyme (5E9G) with their best binding energy compound.
| Compounds | Interacting amino acid residues | Bond distance (Å) | Interaction category | Type of interaction |
|---|---|---|---|---|
| 1YBV vs. Camptothecin | A:ALA171 | 4.30500 | Hy Bond | Pi-Alkyl |
| A:VAL172 | 4.42792 | Hy Bond | Alkyl | |
| A:PRO173 | 4.36460 | Hy Bond | Alkyl | |
| A:PRO173 | 3.91795 | Hy Bond | Pi-Alkyl | |
| A:PRO173 | 4.56089 | Hy Bond | Pi-Alkyl | |
| A:TYR223 | 5.01426 | Hy Bond | Pi-Alkyl | |
| A:ILE224 | 4.77982 | Hy Bond | Amide-Pi Stacked | |
| A:ILE224 | 4.82795 | Hy Bond | Amide-Pi Stacked | |
| A:PRO225 | 3.83534 | Hy Bond | Alkyl | |
| A:PRO225 | 5.29914 | Hy Bond | Pi-Alkyl | |
| A:PRO225 | 4.40528 | Hy Bond | Pi-Alkyl | |
| A:PRO225 | 4.02346 | Hy Bond | Pi-Alkyl | |
| A:TYR238 | 2.88848 | H Bond | Conventional H Bond | |
| A:TRP243 | 3.02142 | H Bond | Conventional H Bond | |
| A:TRP243 | 4.71108 | Hy Bond | Pi-Alkyl | |
| A:TRP243 | 4.90207 | Hy Bond | Pi-Alkyl | |
| A:MET283 | 3.97625 | Hy Bond | Alkyl | |
| 1STD vs. Camptothecin | A:TYR30 | 3.03114 | H Bond | Conventional H Bond |
| A:TYR50 | 2.83592 | H Bond | Carbon H Bond | |
| A:TYR50 | 4.5893 | Hy Bond | Pi-Alkyl | |
| A:PHE53 | 5.47049 | Hy Bond | Pi-Alkyl | |
| A:LEU54 | 5.42091 | Hy Bond | Pi-Alkyl | |
| A:VAL75 | 4.62589 | Hy Bond | Pi-Alkyl | |
| A:VAL108 | 3.99317 | Hy Bond | Alkyl | |
| A:HIS110 | 4.60518 | Hy Bond | Pi-Alkyl | |
| A:ALA127 | 3.55428 | Hy Bond | Alkyl | |
| A:ILE151 | 4.5329 | Hy Bond | Alkyl | |
| A:PHE158 | 4.45972 | Hy Bond | Pi-Alkyl | |
| A:ARG166 | 5.48424 | Hy Bond | Pi-Alkyl | |
| 5E9G vs. GKK1032A2 | A:TRP440 | 3.68425 | Hy Bond | Pi-Pi Stacked |
| A:GLN449 | 2.43557 | H Bond | Conventional H Bond | |
| A:ILE466 | 5.34579 | Hy Bond | Alkyl | |
| A:ALA469 | 3.86322 | Hy Bond | Alkyl | |
| 6JBI vs. GKK1032A2 | A:HIS112 | 2.85945 | H Bond | Conventional H Bond |
| A:HIS181 | 4.11942 | Hy Bond | Pi-Alkyl | |
| A:THR182 | 2.98721 | H Bond | Carbon H Bond | |
| A:LYS294 | 3.46775 | H Bond | Pi-Donor H Bond | |
| A:MET390 | 2.68059 | H Bond | Conventional H Bond | |
| A:LEU392 | 4.47259 | Hy Bond | Alkyl |
H hydrogen, Hy hydrophobic.