Table 1.
Assembly metrics of Y. cagnagella genome and selected lepidopteran genome assemblies.
| Species (Family) | Genome size (Mbp) | Assembly length (Mbp) | Num. of fragments | N50 (Mbp) | Heter. (%) | Repeats (%) | BUSCO (Insecta) | Predicted genes |
|---|---|---|---|---|---|---|---|---|
| SPECIES OF INTEREST | ||||||||
| Yponomeuta cagnagella (Yponomeutidae) | 709.5 | 626.3 | 11,790 | 0.1 | 1.3 | 46.7 | C: 96.9% [S: 86.4%, D: 10.5%] F: 1.6%, M: 1.5%a | 30,003 |
| MODEL SPECIES | ||||||||
| Bombyx mori (Bombycidae) | 508.6b | 460.3 | 696 | 16.8 | NA | 46.8 | C: 99.0% [S: 97.9%, D: 1.1] F: 0.3%, M: 0.7%a | 16,880 |
| Plutella xylostella (Plutellidae) | 339.4 | 328.8 | 443 | 11.1 | 0.01 -0.04 | NA | C: 99.2% [S: 98.0%, D:1.2%] F: 0.3%, M: 0.5%a | 19,002 |
| ONT-BASED ASSEMBLIES | ||||||||
| Drepana arcuata (Drepanidae) | 303.2 | 270.5 | 11,493 | 0.1 | 1.0 | 8.3 | C: 86.5 % [S: 84.3%, D: 2.2%] F: 4.2, M: 9.3%a | 10,398 |
| Ephestia elutella (Pyralidae) | NA | 576.9 | 804 | 19.0 | NA | 58.1 | C: 92.9% [S: 91.9%, D: 1%] F: 2.2%, M: 4.9% | 15,637 |
| Eumeta variegate (Psychidae) | 708.7 | 731.9 | 12,720 | 0.3 | 0.9 | NA | C: 94.9% [S: 91.5%, D: 3.4%] F: 1.4 %, M: 3.7%a | 36,444 |
| Manduca sexta (Sphingidae) | 420.5b | 470.0 | 4,057 | 14.3 | NA | 33.9 | C: 98.1% [S: 93.1%, D: 5%] F: 0.7%, M: 1.2% | 25,256 |
| Maniola jurtina (Nymphalidae) | 576.4 | 618.4 | 20,143 | 0.2 | 1.9 | 75.6 | C: 88.7% [S: 68.9%, D: 19.8%] F: 3.5%, M: 7.7% | 38,101 |
| Sesamia nonagrioides (Noctuidae) | 943.5 | 1,021.3 | 2,553 | 1.1 | NA | NA | C: 98.5% [S: 94.1%, D:4.4%] F: 0.7%, M: 0.8%a | 17,230 |
| Spodoptera exigua (Noctuidae) | 370.0 | 419.3 | 946 | 1.1 | NA | NA | C: 99.4% [S: 96.5%, D: 2.9%.] F: 0.2%, M: 0.4%a | 18,477 |
Heter. heterozygosity, NA not available.
aBUSCO run in this study (see Materials and Methods).
bAnimal Genome Size Database (https://www.genomesize.com/).