TABLE 1.
Genomic characteristics of Escherichia coli ST648 strain isolated from human origin.
| Characteristics of E. coli ST648 | Illumina (MiSeq) | Oxford Nanopore (MinION) |
| Source | Human urine | Human urine |
| Genome size (bp) | 5,334,251 | 5,411,927 |
| Contigs | 176 | 4 |
| G + C Content (%) | 50.2 | 50.3 |
| tRNA | 83 | 88 |
| rRNA | 5 | 22 |
| No. of CDS | 5303 | 5,423 |
| Serotype | O83:H42 | O83:H42 |
| fimH-type | H58 | H58 |
| ST | 648 | 648 |
| Mobilome | IS5, ISL3, IS630, IS3, IS121, IS21, ISEcp1, IS4 | IS5, ISL3, IS6, IS91, ISEcp1, IS21, IS4, IS110, IS30, ISAs1, IS630 |
| Virulome | iutA, terC, IpfA, SitA, yfcV, terC, hra, eiIA, traT, chuA, air, iucC | traT, iucC, sitA, iutA, terC, lpfA, eilA, yfcV, chuA, gad, air, hlyE, hra |
| Resistome | ||
| Aminoglycosides | aadA22 | aadA22 |
| β-lactams | blaNDM–5, blaTEM–1B, blaCMY–2 | blaNDM–5, blaTEM–1B, blaCMY–2 |
| Chloramphenicol | florR | floR |
| Macrolides | ermB, mphA, erm(42), lnuG | erm(B), mph(A), erm(42), lnu(G) |
| Quinolones | qnrS1 | qnrS1 |
| Sulfonamides | sul2 | sul2 |
| Tetracyclines | tet(X4), tetM | tet(X4), tet(M) |
| Plasmidome | IncHI1A, IncHI1B, IncFII, IncFIA, IncFIB, IncQ1, Col, IncX4 | IncHI1A, IncHI1B, IncFII, IncFIA, IncFIB, IncQ1, IncX4 |
| BioProject accession number | PRJNA850111 | PRJNA850111 |
ST, sequence type; CDS, coding sequences.