Table 2.
Composition of C. trachomatis genotypes in 20 specimens of mixed-genotype infections using high-throughput sequencing in Chenzhou, China during 2019 and 2021.
| Ratio of major versus minor genotype | Sample ID | Total sequencing reads | C. trachomatis genotypes (reads, %) | |
|---|---|---|---|---|
| Major genotype | Minor genotype | |||
| ≤9 | CZ-13154 | 2865633 | D 1495589(52.19) | G 1369971(47.81) |
| CZ-2906 | 107674 | D 57498(53.40) | E 50172(46.60) | |
| CZ-7399 | 2114109 | F 1267351(59.95) | H 838830(39.68) | |
| CZ-3706 | 2080328 | J 1266951(60.90) | E 804196(38.66) | |
| CZ-8033 | 1630749 | D 1023163(62.74) | F 599935(36.79) | |
| CZ-9288 | 130285 | D 90742(69.65) | F 39218(30.10) | |
| CZ-3612 | 1695345 | F 1235996(72.91) | E 458921(27.07) | |
| CZ-2117 | 1088398 | E 882877(81.12) | H 185179(17.01) | |
| K 14015(1.29) | ||||
| CZ-2021 | 191006 | E 161181(84.39) | J 26375(13.81) | |
| F 3116(1.63) | ||||
| CZ-4061 | 2242349 | J 1996995(89.06) | F 245339(10.94) | |
| >9 | CZ-1761 | 124818 | D 116786(93.57) | E 8027(6.43) |
| CZ-29060 | 79424 | G 77444(97.51) | F 1244(1.57) | |
| CZ-1708 | 1895050 | H 1848791(97.56) | E 39242(2.07) | |
| CZ-10505 | 1729932 | E 1690609(97.73) | J 26740(1.55) | |
| CZ-1860 | 145204 | J 142371(98.05) | E 2829(1.95) | |
| CZ-23209 | 197318 | F 193812(98.22) | G 3480(1.76) | |
| CZ-2477 | 139817 | G 137418(98.28) | F 1486(1.06) | |
| CZ-29117 | 99617 | K 98083(98.46) | J 1521(1.53) | |
| CZ-28087 | 278981 | G 275295(98.68) | F 3574(1.28) | |
| CZ-15863 | 61654 | E 60889(98.76) | F 757(1.23) | |