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. 2022 Oct 25;12(11):1556. doi: 10.3390/biom12111556
APCs Antigen presenting cells
BC Breast cancer
BL1 Basal-like 1
BL2 Basal-like 2
CTLA-4 Cytotoxic T-lymphocyte-associated antigen-4
DEGs Differentially expressed genes
FBP1 Fructose-1,6-bisphosphatase
FDA Food and Drug Administration
FDR False discovery rate
GDPS Genomics of Drug Sensitivity in Cancer
GO Gene Ontology
GSVA Gene Set Variation Analysis
GSEA Gene set enrichment Analysis
ICIs Immune checkpoint inhibitors
IM Immunomodulatory
IPS Immunophenoscore
IRGs Immune-related genes
IRGP Immune-related gene panel
KEGG Kyoto Encyclopedia of Genes and Genomes
LAR Luminal androgen receptor
LASSO Least absolute shrinkage and selection operator
M Mesenchymal
METABRIC Molecular Taxonomy of Breast Cancer International Consortium
MHC Major histocompatibility complex
MSL Mesenchymal stem-like
OS Overall survival
PARP Poly (ADP-ribose) polymerase
PCA Principal component analysis
PD-1 Programmed cell death receptor 1
PD-L1 Programmed cell death 1 ligand 1
ROC Receiver operating characteristic
ssGSEA Single-sample gene-set enrichment analysis
STAT3 Signal transducer and activator of transcription 3
TAPBPL TAP binding protein like
TCGA The Cancer Genome Atlas
TILs Tumor infiltrating lymphocytes
TNBC Triple-negative breast cancer
TOM Topological overlap matrix
t-SNE t-distributed stochastic neighbor embedding
WGCNA Weighted gene co-expression network analysis