RIN	replicative instability
MYBL2	Myb proto-oncogene like 2
TCGA	The Cancer Genome Atlas
OS	overall survival
PFS	progression free survival
DSS	disease-specific survival
LUAD	lung adenocarcinoma
IDHMUT LGG	isocitrate dehydrogenase-mutant lower grade glioma
PAAD	pancreatic adenocarcinoma
UCEC	uterine corpus endometrial carcinoma
SARC	sarcoma
FGA	fraction of the genome altered
MSI	microsatellite instability
HR	homologous recombination
RPS	repair proficiency score
Combined-HRD score	combined homologous recombination deficiency score
WE score	weighted expression score
SSBR	single-strand break repair
DSBR	double-strand break repair
TLS	translesion synthesis
NER	nucleotide excision repair
NHEJ	non-homologous end-joining
DR	direct reversal repair
COSMIC	Catalog of Somatic Mutations in Cancer
SBS	single-base substitution
RS score	replication stress score
MPS	mutational position score
ERFS	early replicating fragile sites
MiDAS	mitotic DNA synthesis sites
RSS sites	replication stress sensitive sites
MDSC	myeloid derived suppressor cell
ORIEN	Oncology Research Information Exchange Network
ID-BRE	invasive ductal breast cancer
LRMM	late-relapse multiple myeloma
FUSED	FUSion Error-prone repair Detection
CIN	chromosomal instability
MMEJ	microhomology mediated end-joining
FA	Fanconi Anemia
GO	Gene Ontology