Table 3.
Viral family, species, reads numbers, and genome structure of viruses detected in the respiratory sample pools of children with SARI during winter period.
Number of reads/coverage %
| Family | Viral Species/Read Number | Genome Structure | E1 | F1 | G1 |
|---|---|---|---|---|---|
| Picornaviridae | HRV-C (231) | ssRNA | 130/30.9 | 69/26.5 | 32/7.5 |
| HRV-A (234) | ssRNA | 6/3.5 | 26/13 | 206/52 | |
| Enterovirus B (126) | ssRNA | 31/11.4 | 95/30.7 | ||
| Pneumoviridae | RSV-B (186) | ssRNA | 126/18.7 | 15/5.5 | 145/16 |
| RSV-A (1) | ssRNA | 1/0.7 | |||
| Retroviridae | Human endogenous retrovirus K113 (39) | ssRNA-RT | 11/1.8 | 28/8.4 | |
| Picobirnaviridae | Otarine Picobirnavirus (segment 2) (9) | dsRNA | 9/15.3 | ||
| Picobirnavirus green monkey/KNA/2015 (325) | dsRNA | 325/82 | |||
| Chicken Picobirnavirus (segment RNA 1) (126) | dsRNA | 126/17.5 | |||
| Endornaviridae | BPA (6) | ssRNA | 5/0.6 | 1/0.4 | |
| Coronaviridae | Human coronavirus NL63 (3) | ssRNA | 3/0.8 | ||
| Virgaviridae | Tobacco mosaic virus (6) | ssRNA | 6/5.4 | ||
| Retroviridae | Equine infectious anaemia virus (4) | ssRNA | 2/3.7 | 2/1.8 | |
| Totiviridae | Scheffersomyces segobiensis virus L (40) | dsRNA | 40/10.2 | ||
| Tombusviridae | Bermuda grass latent virus (8) | ssRNA | 8/4.5 |
HRV-C: human rhinovirus C; HRV-A: human rhinovirus A; RSV A: respiratory syncytial virus A; RSV-B: respiratory syncytial virus B; BPA’: bell pepper alphaendornavirus; SSVL: scheffersomyces segobiensis virus L.