Table 4.
Efficiency of PCR amplification and sequencing for Colletotrichum specimens for four DNA barcode regions.
Barcode Region | N | Alignment Length (bp) | % AE | % SE |
---|---|---|---|---|
ITS | 26 | 556 | 100 | 100 |
ACT | 26 | 246 | 100 | 100 |
EF-1a | 19 | 242 | 75.0 | 100 |
Tub2 | 26 | 750 | 100 | 100 |
N = samples with successful amplification, % AE = Percentage of amplification efficiency, % SE = percentage of sequencing efficiency (from the amplified barcodes).