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. 2022 Oct 25;8(11):1123. doi: 10.3390/jof8111123

Table 5.

Statistical parameters of genetic diversity within the genus Colletotrichum, calculated in MEGA11. Estimates of average evolutionary divergence over all sequence pairs from the number of base substitutions per site are shown. The standard error estimate(s) were obtained by a bootstrap procedure (500 replicates). The rate variation among sites was modelled with a gamma distribution (shape parameter = 1). All ambiguous positions were removed for each sequence pair (pairwise deletion option).

DNA Barcode Region N Taxa Ns C V Pi S Average Pairwise Distance/SE
ITS 46 556 434 115 68 47 0.051/0.006
ACT 52 246 127 119 85 34 0.191/0.020
EF-1a 25 242 25 128 85 43 0.397/0.053
Tub2 57 750 421 328 270 58 0.170/0.011

Ns = total number of sites, C = number of conserved sites, V = number of variable sites, Pi = number of parsimony informative sites, S = singleton sites.