Table 1.
Term | Estimate | std.error | Statistic | p-Value | Overlapped Gene | Nearest Upstream Gene | Nearest Downstream Gene |
---|---|---|---|---|---|---|---|
rs1173743 | 0.1453 | 0.031 | 4.712 | NPR3 | |||
rs4660586 | −0.1570 | 0.034 | −4.603 | HIVEP3 | |||
rs77979097 | 0.3020 | 0.071 | 4.266 | CSMD1 | |||
rs29282 | 0.2175 | 0.053 | 4.128 | FMR1 | |||
rs144401118 | 0.5282 | 0.130 | 4.068 | RP11-102N11.1 | SMLR1 | ||
rs167479 | −0.1247 | 0.031 | −4.000 | 0.0001 | RGL3 | ||
rs193168008 | 1.1161 | 0.282 | 3.965 | 0.0001 | LINC01019 | IRX1 | |
rs534036441 | 0.9111 | 0.234 | 3.901 | 0.0001 | RNU6-163P | LINC00704 | |
rs537363408 | 1.0705 | 0.275 | 3.893 | 0.0001 | RAD51B | ||
rs190092234 | 1.1370 | 0.294 | 3.865 | 0.0001 | OSBPL6 | ||
rs141667164 | 1.2467 | 0.326 | 3.830 | 0.0001 | DEF6 | PPARD | |
rs115654387 | 0.4269 | 0.112 | 3.811 | 0.0001 | RP11-329N22.1 | RP11-334L9.1 | |
rs544149038 | 1.3523 | 0.360 | 3.753 | 0.0002 | C14orf177 | AL132796.1 | |
rs113046103 | 0.2230 | 0.060 | 3.703 | 0.0002 | SHANK2 | ||
rs561028558 | 1.1228 | 0.303 | 3.700 | 0.0002 | TOP2A | ||
rs191614564 | 0.4953 | 0.137 | 3.607 | 0.0003 | SCRT2 | SLC52A3 | |
rs72674615 | 0.6124 | 0.170 | 3.604 | 0.0003 | LINC00609; PTCSC3 | ||
rs113882455 | 0.4979 | 0.143 | 3.474 | 0.0005 | U40455.1 | RPL7L1P11 | |
rs28558138 | 0.1080 | 0.031 | 3.452 | 0.0006 | TBC1D19 | STIM2 | |
rs71519836 | 0.2241 | 0.065 | 3.447 | 0.0006 | MYOM2 | AC133633.2 | |
rs80043362 | 0.1698 | 0.050 | 3.413 | 0.0006 | JPH2 | ||
rs183374245 | 0.4377 | 0.129 | 3.400 | 0.0007 | CACNA2D1 | ||
rs2409532 | −0.0991 | 0.030 | −3.342 | 0.0008 | AP000330.8 | ||
rs145385264 | 0.2780 | 0.083 | 3.333 | 0.0009 | RP11-344P13.4 | ||
rs558954655 | 0.7364 | 0.222 | 3.311 | 0.0009 | SPON2 |
1 Table with top most significant SNPs from the polygenic risk score as the result of the machine-learning procedure. SNPs are annotated using SNPnexus. Full Table with all 115 SNPs and their weights is available in the Supplementary Table S1.