| ADAMTS17 | A disintegrin and metalloproteinase with thrombospondin motifs 17 |
| ADM | Adipogenic differentiation medium |
| Akt | Protein Kinase B |
| ALP | Alkaline phosphatase |
| AML | Acute myelogenous leukaemia |
| ARS | Alizarin Red S |
| BMPs | Bone morphogenetic proteins |
| BMSCs | Bone marrow stem cells |
| Cbfa1 | Core-binding factor subunit alpha-1 |
| Cluster ID | Cluster identification |
| COL7A1 | Collagen alpha-1 (VII) chain |
| COL13A1 | Collagen alpha-1 (XIII) chain |
| COL21A1 | Collagen alpha-1 (XXI) chain |
| COL27A1 | Collagen alpha-1 (XXVII) chain |
| COL4A5 | Collagen alpha-5 (IV) chain |
| DOP1B | Protein dopey-2 |
| ECM | Extracellular matrix |
| EMID1 | EMI domain-containing protein 1 |
| ERK | Extracellular signal-regulated kinase |
| GO | Gene ontology |
| hDPs | Human dental pulp cells |
| hDPSCs | Human dental pulp stem cells |
| hFc | Human IgG Fc fragment |
| IGF | Insulin-like growth factor |
| IGFBPs | Insulin-like growth factor-binding proteins |
| Jagged-1 | Indirect immobilised Jagged-1 |
| JNK | Jun kinases |
| KY | Kyphoscoliosis peptidase |
| LC-MS | Liquid Chromatography–Tandem Mass Spectrometry |
| MAPK | Mitogen-activated protein kinase |
| MCODE | Molecular Complex Detection |
| MeV | MultiExperiment Viewer |
| MMP16 | Matrix metalloproteinase-16 |
| MSCs | Mesenchymal stem cells |
| mTOR | Mammalian target of rapamycin |
| MUC19 | Mucin-19 |
| MXRA5 | Matrix-remodeling-associated protein 5 |
| NanoLC-MS/MS | Nano-liquid chromatography–tandem mass spectrometry |
| NCAM | Neural cell adhesion molecule |
| NICD | Notch intracellular domain |
| OCN | Osteocalcin |
| OM | Osteogenic differentiation medium |
| OPN | Osteopontin |
| PBS | Phosphate-buffered saline |
| PCR | Polymerase chain reaction |
| PDLSCs | Periodontal ligament stem cells |
| PI3K | Phosphatidylinositol 3-kinase |
| PLXDC1 | Plexin domain-containing protein 1 |
| PPI | Protein–protein interaction |
| Runx2 | Runt-related transcription factor 2 |
| SDS | Sodium Dodecyl Sulfate |
| SMAD | Suppressor of mothers against decapentaplegic |
| TGF-β | Transforming growth factor-beta |