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. 2022 Nov 7;8(11):303. doi: 10.3390/jimaging8110303

Table 2.

Harmonization techniques publicly available on GitHub.

Reference. Harmonization Method GitHub
Reinhold et al. [27] Fuzzy C-means https://github.com/jcreinhold/intensity-normalization, accessed on 9 September 2022
Reinhold et al. [27] Gaussian mixture model (GMM) https://github.com/jcreinhold/intensity-normalization, accessed on 11 October 2022
Reinhold et al. [27] Kernel Density Estimate (KDE) https://github.com/jcreinhold/intensity-normalization, accessed on 30 August 2022
Shinohara et al. [68] Z-Score https://github.com/jcreinhold/intensity-normalization, accessed on 8 October 2022;
https://github.com/Jfortin1/RAVEL, accessed on 8 October 2022
Shinohara et al. [68] White Stripe https://github.com/jcreinhold/intensity-normalization, accessed on 11 September 2022;
https://github.com/Jfortin1/RAVEL, accessed on 11 September 2022
Fortin et al. [69] Ravel https://github.com/jcreinhold/intensity-normalization, accessed on 12 August 2022;
https://github.com/Jfortin1/RAVEL, accessed on 12 August 2022
Nyul et al. [70] Histogram Matching https://github.com/jcreinhold/intensity-normalization, accessed on 24 October 2022;
https://github.com/Jfortin1/RAVEL, accessed on 24 October 2022;
https://github.com/sergivalverde/MRI_intensity_normalization, accessed on 24 October 2022
Johnson et al. [71]
Fortin et al. [28]
ComBat, M-Combat https://github.com/Jfortin1/ComBatHarmonization, accessed on 18 September 2022;
https://github.com/ncullen93/neuroCombat/tree/master/neuroCombat, accessed on 18 September 2022
Horng et al. [72] Nested & GMM ComBat https://github.com/hannah-horng/generalized-combat, accessed on 3 October 2022
Beer et al. [29] Longitudinal ComBat https://github.com/jcbeer/longCombat, accessed on 31 October 2022
Johnson et al. [71]
Fortin et al. [28]
ComBaTool
Standalone web application
https://forlhac.shinyapps.io/Shiny_ComBat/, accessed on 27 September 2022
Garcia-Dias et al. [73] NeuroHarmony https://github.com/garciadias/Neuroharmony, accessed on 23 August 2022
C. Ma et al. [30] Deep Learning https://github.com/horsepurve/StyleSegor, accessed on 21 September 2022
D. Tian et al. [31] Deep Learning https://github.com/DezhengTian/DeRed-Harmonization, accessed on 22 September 2022