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. 2022 Nov 12;23(22):13972. doi: 10.3390/ijms232213972

Table 2.

Binding free energy (ΔGbind) values (in Kcal/mol) and their components for the nsp16 systems by MM/GBSA. The experimental free energy (ΔGexp) for SFG and SAM analogs were calculated from IC50 values obtained by Bobileva et al. [11].

System
ΔEvdW
ΔEele
ΔGGB
ΔGSA
ΔGbind
ΔGexp
SAM −51.2 ± 0.1 −370.4 ± 0.3 358.4 ± 0.2 −6.8 ± 0.1 −70.0 ± 0.1 -
SFG −45.2 ± 0.1 −83.5 ± 0.3 94.8 ± 0.2 −5.9 ± 0.1 −39.8 ± 0.1 −8.3
1a −41.8 ± 0.1 72.0 ± 0.7 −71.0 ± 0.5 −6.0 ± 0.1 −46.8 ± 0.2 −10.2
2a −48.3 ± 0.1 34.8 ± 0.4 −38.8 ± 0.3 −6.4 ± 0.1 −58.7 ± 0.2 −11.5
2b −51.9 ± 0.1 −54.6 ± 0.3 63.2 ± 0.1 −6.3 ± 0.1 −49.6 ± 0.2 −9.6
4c −47.8 ± 0.1 98.8 ± 0.5 −74.9 ± 0.3 −6.2 ± 0.1 −30.1 ± 0.2 −5.0