Table 4.
The selected enriched GO terms for the seedlings of acutely irradiated seeds in comparison with seeds of the same accession without additional irradiation.
| Acutely Irradiated Plants of the Accession Bab-0 | ||
| GO Terms | Up/Downregulated Genes | p-Value |
| Molecular Function | ||
| glutathione transferase activity (GO:000258) | Up | 2.6 × 10−4 |
| kinase activity (GO:0016301) | Up | 3.5 × 10−4 |
| xyloglucan: xyloglucosyl transferase activity (GO:0016762) | Up | 2.3 × 10−3 |
| oxidoreductase activity, act. on a sulphur group of donors (GO:0016667) | Up | 4.3 × 10−2 |
| hydrolase activity, hydrolysing O-glycosyl compounds (GO:0046527) | Up/Down | 2.4 × 10−2/2.9 × 10−2 |
| peroxidase activity (GO:0004601) | Down | 9.9 × 10−5 |
| heme biding (GO:0020037) | Down | 2.1 × 10−4 |
| copper ion binding (GO:0005507) | Down | 2.8 × 10−3 |
| oxidoreductase activity, oxidizing metal ions (GO:0016722) | Down | 2.4 × 10−3 |
| Biological Process | ||
| response to toxic substance (GO:0009636) | Up | 9.5 × 10−6 |
| response to salicylic acid (GO:0009751) | Up | 8.3 × 10−5 |
| toxic catabolic process (GO:0009407) | Up | 4.4 × 10−5 |
| defence response to bacterium (GO:0042742) | Up | 4.0 × 10−5 |
| response to wounding (GO:0009611) | Up | 2.5 × 10−5 |
| response to jasmonic acid (GO:0009753) | Up | 1.5 × 10−4 |
| xyloglucan metabolic process (GO:0010411) | Up | 8.8 × 10−3 |
| response to virus (GO:0009615) | Up | 6.3 × 10−3 |
| response to abscisic acid (GO:0009737) | Up | 6.0 × 10−3 |
| defence response to fungus (GO:0050832) | Up | 1.6 × 10−3 |
| oxidation-reduction process (GO:0055114) | Up/Down | 2.7 × 10−2/1.9 × 10−6 |
| leaf senescence (GO:0010150) | Up | 2.4 × 10−2 |
| response to salt stress (GO:0009651) | Up | 1.4 × 10−2 |
| response to water deprivation (GO:0009414) | Up | 1.7 × 10−2 |
| suberin biosynthetic process (GO:0010345) | Down | 1.4 × 10−6 |
| hydrogen peroxide catabolic process (GO:0042744) | Down | 4.5 × 10−5 |
| response to oxidative stress (GO:0006979) | Down | 5.7 × 10−4 |
| root morphogenesis (GO:0010015) | Down | 2.7 × 10−4 |
| lignin metabolic process (GO:0009808) | Down | 5.2 × 10−3 |
| plant-type cell wall organization (GO:0009664) | Down | 4.1 × 10−3 |
| Cellular Component | ||
| plasma membrane (GO:0005886) | Up | 8.0 × 10−4 |
| apoplast (GO:0048046) | Up | 2.7 × 10−3 |
| integral component of membrane (GO:0016021) | Up | 1.3 × 10−3 |
| cell wall (GO:0005618) | Up | 1.1 × 10−2 |
| extracellular region (GO:0005576) | Down | 5.2 × 10−5 |
| Acutely Irradiated Plants of the Accession VS-0 | ||
| GO Terms | Up/Downregulated Genes | p-Value |
| Molecular Function | ||
| xyloglucan: xyloglucosyl transferase activity (GO:0016762) | Up | 2.2 × 10−3 |
| peroxidase activity (GO:0004601) | Down | 3.6 × 10−8 |
| heme binding (GO:0020037) | Down | 3.8 × 10−6 |
| quercetin 3-O-glucosyltransferase activity (GO:0080043) | Down | 3.8 × 10−2 |
| quercetin 7-O-glucosyltransferase activity (GO:0080043) | Down | 3.8 × 10−2 |
| symporter activity (GO:0015293) | Down | 2.7 × 10−2 |
| Biological Process | ||
| response to jasmonic acid (GO:0009753) | Up | 3.9 × 10−6 |
| defence response to fungus (GO:0050832) | Up | 3.3 × 10−6 |
| response to salicylic acid (GO:0009751) | Up | 1.7 × 10−6 |
| defence response to bacterium (GO:0042742) | Up | 1.4 × 10−5 |
| response to reactive oxygen species (GO:0000302) | Up | 6.3 × 10−4 |
| response to salt stress (GO:0009651) | Up | 5.2 × 10−3 |
| xyloglucan metabolic process (GO:0010411) | Up/Down | 4.8 × 10−3/3.0 × 10−2 |
| cellular calcium ion homeostasis (GO:0006874) | Up | 3.0 × 10−3 |
| lignin metabolic process (GO:0009808) | Up/Down | 3.8 × 10−2/1.1 × 10−2 |
| response to abscisic acid (GO:0009737) | Up | 1.3 × 10−2 |
| toxin catabolic process (GO:0009407) | Up | 1.2 × 10−2 |
| hydrogen peroxide metabolic process (GO:0042744) | Down | 7.6 × 10−7 |
| oxidation-reduction process (GO:0055114) | Down | 5.8 × 10−5 |
| response to hypoxia (GO:0001666) | Down | 1.9 × 10−4 |
| response to oxidative stress (GO:000513) | Down | 5.1 × 10−3 |
| plant type cell wall organization (GO:0009664) | Down | 2.2 × 10−3 |
| root morphogenesis (GO:0010015) | Down | 3.0 × 10−2 |
| phenylpropanoid biosynthetic process (GO:0009699) | Down | 3.0 × 10−2 |
| cellular response to starvation (GO:0009267) | Down | 2.6 × 10−2 |
| Cellular Component | ||
| cell wall (GO:0005618) | Up/Down | 3.5 × 10−6/7.6 × 10−6 |
| plasma membrane (GO:0005886) | Up | 4.5 × 10−3 |
| extracellular space (GO:0005615) | Down | 3.3 × 10−2 |
| Acutely Irradiated Plants of the Accession Masa-0 | ||
| GO Terms | Up/Downregulated Genes | p-Value |
| Biological Process | ||
| innate immune response (GO:0045087) | Up | 2.7 × 10−3 |
| regulation of growth (GO:0040008) | Up | 1.7 × 10−3 |
| hormone-mediated signaling pathway (GO:0009755) | Up | 1.2 × 10−2 |
| defence response to another organism (GO:0098542) | Up | 1.4 × 10−2 |
| Cellular Component | ||
| cell wall | Up | 3.5 × 10−2 |