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. 2022 Nov 9;14(11):2480. doi: 10.3390/v14112480

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© 2022 by the authors.

Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).

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Phylogenetic tree showing the first JEV genome sequenced from an aborted fetus from a Queensland piggery in 2022 (green circle, inset) and its relationship to other available genotype IV whole genome sequences available from GenBank. The broader phylogenetic relationships of genotype IV with other JEV genotypes can be seen in the larger tree. The phylogenetic tree was estimated using the maximum likelihood method and a TN model with gamma rate heterogeneity, selected by IQ-TREE v.2.0.6. The results from 1000 bootstrap replicates are shown on the nodes and the scale represents the number of nucleotide substitutions per site.