Table 2.
The successful applications of metagenomic techniques to diagnose fungal pathogens.
| Plant | Aim of Study | Metagenomics Techniques | References |
|---|---|---|---|
| Grape | Determination of fungi and oomycetes in different phyllosphere samples | Metabarcoding | [52] |
| Grape | Determination of soil and leaf-associated fungal microbiota | mNGS-Ilumina | [53] |
| Wheat | Detection of fungal microorganisms in the wheat phyllosphere | Microbiome Metabarcoding using ITS barcodes | [54] |
| Grape | Identification of fungal diseases on the vine trunk | mNGS-Ilumina | [55] |
| Maize | Determination of fungal microbiota after harvest | Metabarcoding | [56] |
| Wheat | Determination of fungal communities in wheat residues | Metabarcoding | [57] |
| Grapevine | Determination of fungal disease agents associated with grapevine | Metabarcoding | [58] |
| Banana | Investigation of the effect of variable soil microbiota on fusarium disease | Metabarcoding | [59] |
| Wheat, maize | To determine Fusarium species in various plants | PaCBio SMRT Sequencing | [60] |
| Strawberry | Determination of microbial communities in strawberry growing soils with different yields | Amplicon Based Metagenomic | [61] |