Table 1.
Global statistics of T. quinquecostatus genome assembly and annotation
| Parameter | Size or number |
|---|---|
| Estimate of genome size (flow cytometry), Mb | 536.25 |
| Estimate of genome size (survey), Mb | 546.18 |
| Assembled genome size, Mb | 528.66 |
| Total length of contigs, Mb | 528.66 |
| Total number of contigs | 628 |
| N50 of contigs, bp | 8,059,748 |
| Largest contig, bp | 17,334,620 |
| Total length of scaffolds, Mb | 528.68 |
| Total number of scaffolds | 478 |
| N50 of scaffolds, bp | 36,440,660 |
| Largest scaffold, bp | 49,018,360 |
| GC content, % | 40.40 |
| Complete CEGMA, % | 97.82 |
| Complete BUSCOs, % | 97.34 |
| Total length of repeat, Mb | 373.28 |
| Repeat density, % | 70.61 |
| Long terminal repeat (LTR) density, % | 61.47 |
| Microsatellite repeat density, % | 9.14 |
| Number of protein-coding genes | 29,676 |
| Number of annotated genes | 28,862 |
| Number of rRNA | 2557 |
| Number of tRNA | 1138 |
| Number of miRNAs | 58 |
| Number of snRNAs | 86 |
| Number of snoRNAs | 68 |
| Number of pseudogenes | 217 |