Table 3.
Primers used in this study
| Name | Sequence |
|---|---|
| FL7R.1 | 5ʹ GAATCCCATAGAAGTATGTTAAAACTG 3ʹ |
| RR7R.1 | 5ʹ CAGTTTTAACATACTTCTATGGGATTC 3ʹ |
| FL7R.2 | 5ʹ CTTTTTTTTTTTTAGGGTACGTCAAAGGTAAG 3ʹ |
| RR7R.2 | 5ʹ CTTACCTTTGACGTACCCTAAAAAAAAAAAAG 3ʹ |
| F∆L29 | 5ʹ CAACCCAAATGTCTCTATCAAGATCGAAGGTG 3ʹ |
| R∆L29 | 5ʹ CACCTTCGATCTTGATAGAGACATTTGGGTTG 3ʹ |
| FV35R | 5ʹ GATCAAGATCGAAGGTCGCGCTACTCCACAAG 3ʹ |
| RV35R | 5ʹ CTTGTGGAGTAGCGCGACCTTCGATCTTGATC 3ʹ |
| FF43R | 5ʹ CACAAGATGCTCAACGTTACTTGGGTAAGCG 3ʹ |
| RR43R | 5ʹ CGCTTACCCAAGTAACGTTGAGCATCTTGTG 3ʹ |
| FY44R | 5ʹ CAAGATGCTCAATTTCGCTTGGGTAAGCGTATTG 3ʹ |
| RY44R | 5ʹ CAATACGCTTACCCAAGCGAAATTGAGCATCTTG 3ʹ |
| FG69R | 5ʹ GAGTTATGTGGCGTAAGGTTACCAG 3ʹ |
| RG69R | 5ʹ CTGGTAACCTTACGCCACATAACTC 3ʹ |
| FG76R | 5ʹ CCAGAACTCACCGTAACTCTGGTGTC 3ʹ |
| RG76R | 5ʹ GACACCAGAGTTACGGTGAGTTCTGG 3ʹ |
| F76, 79 | 5ʹ GGTTACCAGAACTCACCGTAACTCTCGTGTCGTTAG 3ʹ |
| R76, 79 | 5ʹ CTAACGACACGAGAGTTACGGTGAGTTCTGGTAACC 3ʹ |
| FG79R | 5ʹ CACGGTAACTCTCGTGTCGTTAGAGCC 3ʹ |
| RG79R | 5ʹ GGCTCTAACGACACGAGAGTTACCGTG 3ʹ |
| FL102R | 5ʹ CTGTTAGAATCTTCCGGTACCCATCCAACATC 3ʹ |
| RL102R | 5ʹ GATGTTGGATGGGTACCGGAAGATTCTAACAG 3ʹ |
| FY103R | 5ʹ GTTAGAATCTTCTTGCGCCCATCCAACATCTAA 3ʹ |
| RY103R | 5ʹ TTAGATGTTGGATGGGCGCAAGAAGATTCTAAC 3ʹ |
| F∆99–107 | 5ʹ CGGTGCTTCTGTTTAATAATTCTTGTACCCATCC 3ʹ |
| R∆99–107 | 5ʹGGATGGGTACAAGAATTATTAAACAGAAGCACCG 3ʹ |
| FA40-44 | 5ʹ CTCCACAAGCTGCTCAAGCTGCCTTGGGTAAGCGTATTG 3ʹ |
| RA40-44 | 5ʹ CAATACGCTTACCCAAGGCAGCTTGAGCAGCTTGTGGAG 3ʹ |
| FA92-99 |
5ʹ CTTCAGAAACAATTTGCCAGCCGCGGCCGCCGGTGCTGCT GTTGCAATCTTCTTGTACCCATCCAAC 3ʹ |
| RA92-99 |
5ʹ GTTGGATGGGTACAAGAAGATTGCAACAGCAGCACCGGCGGCCG CGGCTGGCAAATTGTTTCTGAAG 3ʹ |
| FA104-107 | 5ʹ GTTAGAATCTTCTTGTACGCAGCCGCCGCCTAAATTTGTTGATTG 3ʹ |
| RA104-107 | 5ʹ CAATCAACAAATTTAGGCGGCGGCTGCGTACAAGAAGATTCTAAC 3ʹ |
| FA102-105 | 5ʹ GTTAGAATCTTCGCGGCCGCAGCCAACATCTAAATTTG 3ʹ |
| RA102-105 | 5ʹ CAAATTTAGATGTTGGCTGCGGCCGCGAAGATTCTAAC 3ʹ |
| FA102-107 | 5ʹ GCTTCTGTTAGAATCTTCGCGGCCGCAGCCGCCGCCTAAATTTG 3ʹ |
| RA102-107 | 5ʹ CAAATTTAGGCGGCGGCTGCGGCCGCGAAGATTCTAACAGAAGC 3ʹ |
| 1. 18S | 5ʹ AGCCATTCGCAGTTTCACTG 3ʹ |
| 2. (D-A2) | 5ʹ TTAAGCGCAGGCCCGGCTGG 3ʹ |
| 3. (A2-A3) | 5ʹ TGTTACCTCTGGGCCC3ʹ |
| 4. 5.8S | 5ʹ TGCGTTCTTCATCGATGCGAGAACC 3ʹ |
| 5. (E-C2) | 5ʹ GGCCAGCAATTTCAAGTTA 3ʹ |
| 6. 25S | 5ʹ CTCCGCTTATTGATATGC 3ʹ |
| L33A.1 | 5ʹ GTAGCGACACCTTCGATCTTGAT 3ʹ |
| L33A.3 | 5ʹ CTTGGAGGCTCTGTAGACGTAGGC 3ʹ |
| SCR1 | 5ʹ GAGGGAACGGCCACAATGTG 3ʹ |