Table 2.
Gene | CHR | LD Pruning at 0.1, Variant coverage | aSPU P-Value |
---|---|---|---|
CYP2E1 | chr10 | 3 | 0.1838 |
CYP2E1 Promoter | chr10 | 1 | 0.3076 |
UGT1A | chr2 | 37 | 0.3796 |
HLA-DRB1 | chr6 | 1 | 0.1318 |
HLA-DRB5 | chr6 | 1 | 0.8841 |
FZD5 | chr2 | 3 | 0.0969 |
SULT1A1 | chr16 | 2 | 0.6893 |
SULT1E1 | chr4 | 8 | 0.0019* |
SULT2A1 | chr19 | 4 | 0.1218 |
CYP2A6 | chr19 | 1 | 0.2997 |
CYP2D6 | chr22 | 2 | 0.5744 |
CYP3A4 | chr7 | 6 | 0.2547 |
UGT2B15 | chr4 | 7 | 0.0949 |
GSTP1 | chr11 | 2 | 0.6413 |
CYP1A2 | chr15 | 3 | 0.4655 |
CD44 | chr11 | 25 | 0.0539 |
XBP1 | chr22 | 3 | 0.6663 |
BTNL2 | chr6 | 20 | 0.4775 |
GRHL3 | chr1 | 12 | 0.8441 |
ANXA11 | chr10 | 19 | 0.6093 |
Following Bonferroni correction with genes with variants included after LD pruning, level of significance was 0.0025. GSTT1, GSTM1, SULT1A4, and SULT1A3 were also tested though after LD pruning, no variants remained and thus, were not included in these analyses.