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. 2022 Nov 1;2(11):100322. doi: 10.1016/j.crmeth.2022.100322
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Mouse anti-centrin Merck Millipore Cat.#04-1624, RRID:AB_10563501
Rabbit anti-pericentrin Abcam Cat.#ab4448, RRID:AB_304461
Rabbit anti-ARL13B Proteintech Cat.#17711-1-AP, RRID:AB_2060867
Mouse anti-polyglutamylated Tubulin AdipoGen Cat.#AG-20B-0020B, RRID:AB_2490211
Rabbit anti-MUM-1 (MRQ-43) Cellmarque Cat.#358R-74
Mouse anti-Ki67 (MIB-1) Agilent Dako Cat.#GA626, RRID:AB_2687921
Alexa Fluor 488 goat anti-mouse IgG Molecular Probes Invitrogen Cat.#A11017, RRID:AB_143160
Alexa Fluor 488 goat anti-mouse IgG Molecular Probes Invitrogen Cat.#A11029, RRID:AB_2534088
Alexa Fluor 568 goat anti-rabbit IgG Molecular Probes Invitrogen Cat.#A11036, RRID:AB_10563566
Alexa Fluor 568 goat anti-rabbit IgG Molecular Probes Invitrogen Cat.#A11011, RRID:AB_143157

Biological samples

Human bone marrow This paper N/A
Human peripheral blood This paper N/A

Chemicals, peptides, and recombinant proteins

Vectashield mounting medium Vector Laboratories Cat.#H-1000
Vectashield mounting medium with DAPI Vector Laboratories Cat.#H-1200
Puromycin Life Technologies Cat.#2600023
Hygromycin Life Technologies Cat.#10687010
Tetracyclin SigmaAldrich Cat.#T7660-5G
FicoLite-H separation medium Linaris Cat.#GTF1511KYA
Triton-X-100 ThermoFisher Scientific Cat.#HFH10
Hoechst 33342 nucleic acid stain Invitrogen Cat.#H3570
TRIzol RNA extraction reagent Invitrogen Cat.#15596026

Critical commercial assays

RNeasy Mini Kit Qiagen Cat.#74104
SV Total RNA Isolation System Promega Cat.#Z3101
Small Sample Labeling Protocol Affymetrix N/A
GeneChip™ Human Genome U133 Plus 2.0 Array Applied Biosystems Cat.#900466

Deposited data

Raw and analyzed data This paper EMPIAR DOI: 10.6019/EMPIAR-11243
Code and exported workflows This paper Mendeley https://doi.org/10.17632/kf7fnbbbxp.1; Github: https://github.com/mobie/centriole-tomo-examples
Additional supplemental data This paper Mendeley, https://doi.org/10.17632/kf7fnbbbxp.1
Gene expression profiling data This paper; Weinhold et al. (2021); Seckinger et al. (2012) ArrayExpress: E-MTAB-81/E-GEOD-2658

Experimental models: Cell lines

U-2 OS ATCC Cat.#HTB-96, RRID:CVCL_0042
U2OS-PLK4 Konotop et al. (2016) N/A
BJ ATCC Cat.#CRL-2522, RRID:CVCL_3653

Software and algorithms

Konstanz Information Miner (KNIME) Berthold et al. (2007) https://www.knime.com/
R 3.5.3 R Core Team (2016) https://cran.r-project.org/
R ‘Survival‘ Package – 3.1-12 Therneau and Grambsch (2000) https://CRAN.R-project.org/package=survival
SerialEM Mastronarde (2005); Schorb et al. (2019) https://bio3d.colorado.edu/SerialEM/
pyEM Schorb et al. (2019) https://git.embl.de/schorb/pyem
IMOD – 4.10.42 Kremer et al. (1996); Mastronarde and Held (2017) https://bio3d.colorado.edu/imod/
AMIRA 2020.1 ThermoFisher Scientific https://thermofisher.com/amira-avizo
ImageJ (Fiji) – 1.53 Schneider et al. (2012) https://imagej.net/software/fiji/
ZEN blue – 2.6 Carl Zeiss Microscopy https://www.zeiss.com/microscopy/int/products/microscope-software/zen.html
NDP.view2 Hamamatsu https://www.hamamatsu.com/eu/en/product/life-science-and-medical-systems/digital-slide-scanner/U12388-01.html
MoBIE Vergara et al. (2021) https://github.com/mobie/mobie-viewer-fiji