Antibodies |
|
Mouse anti-centrin |
Merck Millipore |
Cat.#04-1624, RRID:AB_10563501
|
Rabbit anti-pericentrin |
Abcam |
Cat.#ab4448, RRID:AB_304461
|
Rabbit anti-ARL13B |
Proteintech |
Cat.#17711-1-AP, RRID:AB_2060867
|
Mouse anti-polyglutamylated Tubulin |
AdipoGen |
Cat.#AG-20B-0020B, RRID:AB_2490211
|
Rabbit anti-MUM-1 (MRQ-43) |
Cellmarque |
Cat.#358R-74 |
Mouse anti-Ki67 (MIB-1) |
Agilent Dako |
Cat.#GA626, RRID:AB_2687921
|
Alexa Fluor 488 goat anti-mouse IgG |
Molecular Probes Invitrogen |
Cat.#A11017, RRID:AB_143160
|
Alexa Fluor 488 goat anti-mouse IgG |
Molecular Probes Invitrogen |
Cat.#A11029, RRID:AB_2534088
|
Alexa Fluor 568 goat anti-rabbit IgG |
Molecular Probes Invitrogen |
Cat.#A11036, RRID:AB_10563566
|
Alexa Fluor 568 goat anti-rabbit IgG |
Molecular Probes Invitrogen |
Cat.#A11011, RRID:AB_143157
|
|
Biological samples |
|
Human bone marrow |
This paper |
N/A |
Human peripheral blood |
This paper |
N/A |
|
Chemicals, peptides, and recombinant proteins |
|
Vectashield mounting medium |
Vector Laboratories |
Cat.#H-1000 |
Vectashield mounting medium with DAPI |
Vector Laboratories |
Cat.#H-1200 |
Puromycin |
Life Technologies |
Cat.#2600023 |
Hygromycin |
Life Technologies |
Cat.#10687010 |
Tetracyclin |
SigmaAldrich |
Cat.#T7660-5G |
FicoLite-H separation medium |
Linaris |
Cat.#GTF1511KYA |
Triton-X-100 |
ThermoFisher Scientific |
Cat.#HFH10 |
Hoechst 33342 nucleic acid stain |
Invitrogen |
Cat.#H3570 |
TRIzol RNA extraction reagent |
Invitrogen |
Cat.#15596026 |
|
Critical commercial assays |
|
RNeasy Mini Kit |
Qiagen |
Cat.#74104 |
SV Total RNA Isolation System |
Promega |
Cat.#Z3101 |
Small Sample Labeling Protocol |
Affymetrix |
N/A |
GeneChip™ Human Genome U133 Plus 2.0 Array |
Applied Biosystems |
Cat.#900466 |
|
Deposited data |
|
Raw and analyzed data |
This paper |
EMPIAR DOI: 10.6019/EMPIAR-11243 |
Code and exported workflows |
This paper |
Mendeley https://doi.org/10.17632/kf7fnbbbxp.1; Github: https://github.com/mobie/centriole-tomo-examples
|
Additional supplemental data |
This paper |
Mendeley, https://doi.org/10.17632/kf7fnbbbxp.1
|
Gene expression profiling data |
This paper; Weinhold et al. (2021); Seckinger et al. (2012)
|
ArrayExpress: E-MTAB-81/E-GEOD-2658 |
|
Experimental models: Cell lines |
|
U-2 OS |
ATCC |
Cat.#HTB-96, RRID:CVCL_0042 |
U2OS-PLK4 |
Konotop et al. (2016) |
N/A |
BJ |
ATCC |
Cat.#CRL-2522, RRID:CVCL_3653 |
|
Software and algorithms |
|
Konstanz Information Miner (KNIME) |
Berthold et al. (2007) |
https://www.knime.com/ |
R 3.5.3 |
R Core Team (2016) |
https://cran.r-project.org/ |
R ‘Survival‘ Package – 3.1-12 |
Therneau and Grambsch (2000) |
https://CRAN.R-project.org/package=survival |
SerialEM |
Mastronarde (2005); Schorb et al. (2019)
|
https://bio3d.colorado.edu/SerialEM/ |
pyEM |
Schorb et al. (2019) |
https://git.embl.de/schorb/pyem |
IMOD – 4.10.42 |
Kremer et al. (1996); Mastronarde and Held (2017)
|
https://bio3d.colorado.edu/imod/ |
AMIRA 2020.1 |
ThermoFisher Scientific |
https://thermofisher.com/amira-avizo |
ImageJ (Fiji) – 1.53 |
Schneider et al. (2012) |
https://imagej.net/software/fiji/ |
ZEN blue – 2.6 |
Carl Zeiss Microscopy |
https://www.zeiss.com/microscopy/int/products/microscope-software/zen.html |
NDP.view2 |
Hamamatsu |
https://www.hamamatsu.com/eu/en/product/life-science-and-medical-systems/digital-slide-scanner/U12388-01.html |
MoBIE |
Vergara et al. (2021) |
https://github.com/mobie/mobie-viewer-fiji |