Table 2.
Primers used in this study.
| Primer | Sequence (5′ to 3′) | Target gene |
|---|---|---|
| K1 | CAGTCATAGCCGAATAGCCT | pKD4 |
| K2 | CGGTGCCCTGAATGAACTGC | pKD4 |
| Kt | CGGCCACAGTCGATGAATCC | pKD4 |
| pKD46-F | GATACCGTCCGTTCTTTCCTT | pKD46- |
| pKD46-R | TGATGATACCGCCTGCCTTACT | |
| pCP20-F | ATTGGGTACTGTGGGTTTAGTGGTT | pCP20 |
| pCP20-R | TTGGCTTATCCCAGGAATCTGTC | |
| Phi458-Mu-F | TGGGACTTGTGAGCGCAGTGTTGATGGGGTAATGCTTTGAATTAGAAGCGGATTCTTATAGTGTAGGCTGGAGCTGCTTC | Phi458 |
| Phi458-Mu-R | TCTGGCACTCTCCGTGCTGGCAGAAGTCGCCTCTGTACGTCTCCATCAGGAGGAGGATTCCATATGAATATCCTCCTTAG | |
| qPCR-phi458-F | TGGGACTTGTGAGCGCAG | Deletion of phi458 |
| qPCR-phi458-R | TCTGGCACTCTCCGTGCT | |
| RT-fimH-F | CTTATGGCGGCGTGTTATCT | fimH |
| RT-fimH-R | CGGCTTATCCGTTCTCGAATTA | |
| RT-csgC-F | CCATTGCTTTGACGAAGTTGAG | csgC |
| RT-csgC-R | GCGGCCATTGTTGTGATAAAT | |
| RT-eaeH-F | GTACCCTGAAGGCCACTAAATC | eaeH |
| RT-eaeH-R | GACTGCGTTCCGGTAGTAAAG | |
| RT-ibeA-F | ATGACGGTGGGAACAAGAGAA | ibeA |
| RT-ibeA-R | ATACCCCTATTGAATCCGCAT | |
| RT-aufG-F | CTGGATCAGCAACCTGGATATT | aufG |
| RT-aufG-R | CCCACACATCCGGCATATTA | |
| RT-yqiL-F | AGATCAGACGGTGAACTTTGG | yqiL |
| RT-yqiL-R | TCCCGTAATCACATAGCGTAAAT | |
| RT-ompA-F | TGGGTGTTTCCTACCGTTTC | ompA |
| RT-ompA-R | GAGTGAAGTGCTTGGTCTGT | |
| RT-fepA-F | CAATGCGCCAGAACATAAAGAG | fepA |
| RT-fepA-R | TGTCGAGGTTGCCATACAAG | |
| RT-tsh-F | CACAACCATCCAGGCAGATAA | tsh |
| RT-tsh-R | TGTGCCTTCTTCAAGGGTAAA | |
| RT-yadC-F | GGGTCAGGTTCGTTCTTCTC | yadC |
| RT-yadC-R | GTGACAGTAGTACCCAGGAATG |