TABLE 3.
Details of genomic regions associated with P. sojae resistance identified through the association mapping/GWAS approach in soybean.
| No. of genotypes | GWAS loci | Chromosome | PVE (%) | Markers used | Method | References |
|---|---|---|---|---|---|---|
| 214 | 4 | 2.17 | 5.24–8.14 | 138 SSRs | GLM and MLM | Sun et al. (2014b) |
| 797 | 16 | 3, 13, and 19 | 2.5–3.8 | 19,303 SNPs | MLM | Schneider et al. (2016) |
| 224 | 14 | 3, 6, 4, 9, 11, 15, 16, and 20 | - | 1,645 SNPs | GLM and MLM | Huang et al. (2016) |
| 44–7431 | 28 | 3, 13, and 18 | - | 42,449 | MLM | Chang et al. (2016) |
| 189 | 32 | 3, 4, 5, 7, 10, 13, 14, and 18 | - | 33,625 SNPs | GML and MLM-Q + K | Qin et al. (2017) |
| 337 | 26 | 1 | 6.14–11.18 | 60,862 SNPs | GML and MLM-Q + K | Niu et al. (2018) |
| 279 | 3 | 13 | - | 59,845 SNPs | GLM and MLM (Q + K) | Li et al. (2016b) |
| 169 | 8 | 3, 15 | 13.9–21.1 | 3,807 SNPs | MLM | Ludke et al. (2019) |
| 478 | 24 | 2, 3, 5, 6, 10, 11, 12, 13, 18, and 20 | 2.28–12.1 | 34,248 SNPs | MLMM | Rolling et al., 2020 |
| 495 | 24 | 2, 3, 4, 5, 8, 11, 13, 14, 15, 16, 17, and 18 | 0.21–13.11 | 33,234 SNPs | MLMM | Rolling et al., 2020 |
| 225 | 8 | 3, 7, 14, 15, and 17 | 25.3–33.6 | 28,722 SNPs | CMLM and FARMCPU | Zhao et al. (2020) |
| 2,233 (16 panels) | 75 | All chromosomes | - | ∼33,641–40,954 SNPs | CMLM, MLMM_cof, and FARMCPU | Van et al. (2020) |
a
Markers which explained maximum phenotypic variations and near identified genomic regions.