TABLE 4.
Putative candidate genes identified for P. sojae resistance.
| Parents | Rps genes | Gene model number | Gene function | References |
|---|---|---|---|---|
| Conrad × Sloan | - | Glyma19g40800 | Transducin/WD40 domain-containing | Wang et al. (2012) |
| Glyma19g40840 | Pectinesterase | |||
| Glyma19g40940 | Glycoside hydrolase family 28 protein | |||
| Glyma19g41590 | 2-Deoxyglucose-6-phosphate phosphatase | |||
| Glyma19g41900 | Phloem-specific lectin PP2-like protein | |||
| Glyma19g42120 | Heparan-alpha-glucosaminide N-acetyltransferase | |||
| Glyma19g42200 | Rapid alkalinization factor | |||
| Glyma19g42210 | Rad9 | |||
| Glyma19g42220 | Respiratory burst oxidase 2 | |||
| Glyma19g42240 | Histone H2A 7 | |||
| Glyma19g42390 | Cyclin-dependent protein kinase | |||
| Wandou 15 and Williams | Rps10 | Glyma17g28950.1 | Serine/threonine (Ser/Thr) protein kinases | Zhang et al. (2013a) |
| Glyma17g28970.1 | Serine/threonine (Ser/Thr) protein kinases | |||
| Jikedou 2 × Yudou 29 | RpsYD29 | Glyma03g04030.1 | NBS-LRR | Zhang et al. (2013b), Gao and Bhattacharyya (2008) |
| Glyma03g04080.1 | NBS-LRR | |||
| Nannong 10–1 (P1) × 06–070583 (P2) | Rps JS | Glyma18g51930 | NBS-LRR | Sun et al. (2014a) |
| Glyma18g51950 | NBS-LRR | |||
| Glyma18g51960 | NBS-LRR | |||
| Germplasm panel (797) | - | Glyma.03G034400 | NBR-gene | Schneider et al. (2016) |
| Glyma.03G034200 | Plant defense | |||
| Glyma.03G035700 | Abscisic acid responsive stress | |||
| Glyma.13G194100 | NB-LRR-encoding genes | |||
| Glyma.19G245400 | PR4-related chitin-binding proteins | |||
| Glyma.19G248900 | Ethylene/JA responsive transcription factor | |||
| Germplasm panel (279) | - | Glyma13g32980 | Coat protein I (COPI)-related gene | Li et al. (2016b) |
| Glyma13g33900 | 2OGFE (II) oxygenase family protein | |||
| Glyma13g33512 | Pentatricopeptide (PPR) repeat | |||
| Glyma13g33536 | Leucine-rich repeat domain protein | |||
| Glyma13g33740 | Leucine-rich repeat domain protein | |||
| Glyma13g33243 | Gpi16 subunit | |||
| Glyma13g33260 | Zn-finger protein | |||
| Germplasm panel (224) | - | Glyma15g41680 | LEM3 (ligand-effect modulator 3) family/CDC50-related | Huang et al. (2016) |
| Glyma03g28660 | ARF-related/ADP-ribosylation factor | |||
| Glyma16g30140 | Predicted lipase class 3 gene | |||
| Glyma16g04700 | Thioredoxin | |||
| Glyma20g39240 | DEAD/DEAH box helicase | |||
| Glyma06g01080 | 2OG-Fe (II) oxygenase superfamily | |||
| Glyma16g14080 | Serine/threonine protein kinase | |||
| Glyma11g11100 | Phototropic-responsive NPH3 family protein | |||
| Glyma16g31930 | Zinc finger domain | |||
| Glyma03g04960 | Lipid transport protein | |||
| Glyma04g40800 | Serine/threonine protein kinase | |||
| Glyma09g04310 | Ankyrin repeat and calmodulin-binding motif | |||
| Germplasm panel (189) | - | Glyma.03g034400 | LRR and NB-ARC domains containing disease resistance protein | Qin et al. (2017) |
| Glyma.05g209300 | Disease resistance protein (TIR-NBS class) | |||
| Glyma.05g213400 | Disease resistance responsive (dirigent-like protein) family protein | |||
| Glyma.13g184800 | LRR and NB-ARC domains containing disease resistance protein | |||
| Glyma.07g007800 | Disease resistance protein RPS4-RELATED | |||
| Glyma.03g037000 | LRR and NB-ARC domains containing disease resistance protein | |||
| Glyma.04g205200 | Defense response | |||
| Glyma.13g028100 | RPS4-related disease resistance protein | |||
| Glyma.03g149600 | Resistance to Phytophthora 1 | |||
| Glyma.10g127500 | Disease resistance responsive (dirigent-like protein) family protein | |||
| Glyma.10g129400 | Disease resistance family protein/LRR family protein | |||
| Glyma.10g184300 | RPS4-related disease resistance protein | |||
| Glyma.10g196700 | Disease resistance protein (CC-NBS-LRR class) family | |||
| Glyma.14g079500 | Arabidopsis broad-spectrum mildew resistance protein RPW8 | |||
| Glyma.14g079600 | Arabidopsis broad-spectrum mildew resistance protein RPW8 | |||
| Jikedou 2 × Qichadou 1 | RpsQ | Glyma.03g27200 | Protein with a typical serine/threonine protein kinase structure | Li et al. (2017a) |
| Meng8206 × Linhedafenqing and Meng8206 Zhengyang | RpsHN | Glyma.03g04260 | NB-ARC domain-containing disease resistance protein | Niu et al. (2017) |
| Glyma.03g04300 | NB-ARC domain-containing disease resistance protein | |||
| Glyma.03g04340 | Serine/threonine protein kinase | |||
| Huachun 2 ×Wayao | RpsWY | Glyma03g04350 | Pentatricopeptide repeat-containing protein | Cheng et al. (2017) |
| Glyma03g04360 | Transposase/serine/threonine protein | |||
| Glyma03g04370 | Non-specific lipid-transfer protein 3-like protein | |||
| Germplasm panel (337) | - | Glyma01g32800 | Serine/threonine protein kinase | Niu et al. (2018) |
| Glyma01g32855 | Leucine-rich repeat protein kinase family proteins | |||
| Williams×Zaoshu18 | RpsZS18 | Glyma.02g245700 | EF-hand calcium-binding domain | Zhong et al. (2018a) |
| Glyma.02g245800 | pfkB carbohydrate kinase | |||
| Germplasm panel (169) | Glyma03g03480 | Auxin-responsive family protein | Ludke et al. (2019) | |
| Glyma03g04990 | Aalanine-glyoxylate aminotransferase/beta- Alanine-pyruvate aminotransferase | |||
| Glyma03g05070 | Short-chain dehydrogenase/reductase (SDR) family protein | |||
| Glyma15g20550 | Pectinesterase family protein | |||
| Glyma15g21130 | Expansin-like B3 precursor (EXLB3) | |||
| Zhonghuang47 × Xiu94-11 | RpsX | Glyma.03g027200 | Leucine-rich repeat (LRR) region | Zhong et al. (2019) |
| Hefeng 25 × DongongL-28; Germplasm (225) | - | Glyma.03G033700 | C2H2-like zinc finger protein | Zhao et al. (2020) |
| Glyma.03G033800 | Cell wall β-expansin protein | |||
| Germplasm panel (376) | - | Glyma05g146400 | Mannosyl oligosaccharide glucosidases | Van et al. (2020) |
| Glym05g146500 | Mannosyl oligosaccharide glucosidases | |||
| Glym.05g146600 | ER metallopeptidase | |||
| Glyma05g146900 | Heparan sulfate glycosyltransferase-related | |||
| PI 449459 × Misty | - | Glyma.13G190400 | NBS-LRR | de Ronee et al. (2019) |
| Glyma.19G262700 | AP2/ERF-type transcription factor | |||
| Zaoshu18 × Yudou25 | RpsYD25 | Glyma.03g034700 | Zinc ion binding- and nucleic acid-binding gene | Zhong et al. (2020) |
| Glyma.03g034800 | NBS-LRR | |||
| Glyma.03g034900 | NBS-LRR | |||
| Guizao1 × BRSMG68 | RpsGZ | Glyma.03G034400 | Disease resistance protein (NBS-LRR class), putative | Jiang et al. (2020) |
| Glyma.03G034500 | Disease resistance protein (NBS-LRR class), putative | |||
| Glyma.03G034800 | Disease resistance protein (NBS-LRR class), putative | |||
| Glyma.03G034900 | Disease resistance protein (NBS-LRR class), putative | |||
| Glyma.03G035000 | Domain of unknown function DUF223 | |||
| Glyma.03G035100 | PIF1-like helicase | |||
| Glyma.03G035200 | CW-type zinc finger; B3 DNA-binding domain | |||
| Glyma.03G035300 | Disease resistance protein (NBS-LRR class) | |||
| Glyma.03G035400 | PPR repeat | |||
| Glyma.03G035500 | Plant mobile domain | |||
| Glyma.03G035600 | Protease inhibitor/seed storage/LTP family | |||
| Glyma.03G035800 | Pollen allergen; rare lipoprotein A (RlpA)-like double-psi beta-barrel | |||
| Glyma.03G035900 | Membrane attack complex/perforin domain | |||
| Glyma.03G036000 | Protein tyrosine kinase; serine–threonine protein kinase | |||
| Glyma.03G036200 | Multidrug resistance protein |