Figure 2.

E. pubescens genome assembly. (A) Dotplot of E. pubescens syntenic blocks from Hi-C (High-throughput chromosome conformation capture) genome assembly. Each red segment was marked by different pseudo-chromosome label on the X and Y axis. (B) Circos graph of E. pubescens genome assembly. From outer to inner circles, the outer circle of (a) illustrated 6 chromosomes of E. pubescens; the inner circles of (b–d) showed TE density, gene density and GC content. The solid color lines inside all the circles represented segmental duplication relationships between syntenic blocks of different chromosomes, Chr01-Chr06 and Chr01-Chr03 with orange lines, Chr02-Chr06 and Chr02-Chr03 with light blue lines, Chr03-Chr05 and Chr04-Chr05 with green lines and others with grey lines.