Table 1.
Comparison of genome assembly and annotation, and orthogroups among Pyrus communis genotypes.
| Characteristics | Bartlett_v1 | Bartlett.DH_v2 | d’Anjou |
|---|---|---|---|
| Assembly | |||
| Assembly size (Mb) | 600 | 507.7 | 600 |
| Number of scaffolds | 142,083 | 592 | 5800 |
| Scaffold N50 | 88 Kb | 8.1 Mb | 358.88 Kb |
| Pseudochromosomes | 17 | 17 | 17 |
| Complete BUSCOs | 96.3% | 98.3% | 97.4% |
| Annotation | |||
| Predicted gene number | 43,419 | 37,445 | 45,981 |
| Complete BUSCOs | 93.1% | 81.8% | 92.9% |
| Mean CDS length | 1209 | 1120 | 1343 |
| Gene family classification | |||
| Percentage of genes classified into pear orthogroups | 76.2 | 76.2 | 80.4 |
| Percentage of pear orthogroups containing genes | 93.7 | 81 | 90.7 |
| Number of 26Gv2 orthogroups containing genes | 9878 | 9668 | 9837 |