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. 2022 Nov 28;20:550. doi: 10.1186/s12967-022-03745-5

Table 3.

Number of participants in the PMBB with PGx phenotypes by ancestry based on PharmCAT annotation

Gene Phenotype Genetic Ancestry
EUR AFR EAS SAS AMR UNK TOTAL
CACNA1S Malignant Hyperthermia Susceptibility 4 0 0 0 0 0 4
Uncertain Susceptibility 30.000 11.154 676 562 580 376 43.348
No Result 4 2 1 0 0 0 7
CFTR Ivacaftor responsive in CF patients 474 337 3 7 16 4 841
Ivacaftor non-responsive in CF patients 29.512 10.808 674 555 564 372 42.485
No Result 22 11 0 0 0 0 33
CYP2B6 Intermediate Metabolizer 10.475 5204 222 253 241 142 16.537
Ultrarapid Metabolizer 30 11 3 3 0 0 47
Ambiguous 9 0 0 0 0 0 9
Rapid Metabolizer 965 266 57 19 15 17 1339
Indeterminate 1398 149 2 3 13 7 1572
Normal Metabolizer 15.056 3086 350 199 235 155 19.081
Poor Metabolizer 1776 2060 34 80 69 48 4067
No Result 299 380 9 5 7 7 707
CYP2C19 Intermediate Metabolizer 7538 3465 322 246 119 119 11.809
Ultrarapid Metabolizer 1389 542 0 29 12 12 1984
Likely Poor Metabolizer 3 71 0 0 1 1 76
Likely Intermediate Metabolizer 25 276 0 0 6 2 309
Rapid Metabolizer 8092 2603 9 90 126 68 10.988
Indeterminate 7 278 0 1 3 2 291
Normal Metabolizer 12.208 3441 245 122 305 153 16.474
Poor Metabolizer 692 423 98 67 8 19 1307
No Result 54 57 3 7 0 0 121
CYP2C9 Intermediate Metabolizer 6889 2369 11 48 110 71 9498
Ambiguous 4125 341 38 107 56 43 4710
Indeterminate 769 204 17 21 19 13 1043
Normal Metabolizer 18.170 8177 611 386 395 247 27.986
Poor Metabolizer 7 33 0 0 0 0 40
No Result 48 32 0 0 0 2 82
CYP3A5 Intermediate Metabolizer 3898 5512 294 208 167 110 10.189
Poor Metabolizer 25.959 3283 333 309 388 247 30.519
Indeterminate 2 1 0 0 0 0 3
Normal Metabolizer 146 2357 50 45 25 19 2642
No Result 3 3 0 0 0 0 6
CYP4F2 Not actionable 16.837 9289 420 257 339 221 27.363
Actionable 13.171 1867 257 305 241 155 15.996
DPYD Intermediate Metabolizer 2028 676 16 50 21 18 2809
Ambiguous 8 7 0 0 1 0 16
Indeterminate 642 511 6 23 16 10 1208
Normal Metabolizer 27.283 9952 655 487 542 348 39.267
Poor Metabolizer 47 10 0 2 0 0 59
IFNL3/4 not actionable 13.637 2078 571 345 245 196 17.072
actionable 16.371 9078 106 217 335 180 26.287
NUDT15 Intermediate Metabolizer 317 36 103 53 40 20 569
Indeterminate 163 77 38 1 13 7 299
Normal Metabolizer 29.526 11.043 524 506 527 349 42.475
Poor Metabolizer 1 0 6 2 0 0 9
Possible Intermediate Metabolizer 0 0 6 0 0 0 6
No Result 1 0 0 0 0 0 1
RYR1 Malignant Hyperthermia Susceptibility 23 11 0 0 0 0 34
Uncertain Susceptibility 29.979 11.143 676 562 580 376 43.316
No Result 6 2 1 0 0 0 9
TPMT Intermediate Metabolizer 2293 1068 17 18 68 36 3500
Indeterminate 466 995 16 10 15 11 1513
Normal Metabolizer 27.118 9007 643 533 493 325 38.119
Poor Metabolizer 54 34 0 0 1 1 90
Possible Intermediate Metabolizer 61 48 1 1 1 3 115
No Result 16 4 0 0 2 0 22
UGT1A1 Intermediate Metabolizer 14.594 5708 274 316 276 182 21.350
Ambiguous 11 6 0 0 0 0 17
Indeterminate 1322 702 3 44 24 6 2101
Normal Metabolizer 11.966 3233 328 140 232 146 16.045
Poor Metabolizer 1528 1199 67 44 37 31 2906
No Result 587 308 5 18 11 11 940
VKORC1 Actionable 19.264 2327 663 183 389 252 23.078
Not actionable 10.744 8829 14 379 191 124 20.281
SLCO1B1 Increased Function 1280 155 0 1 9 5 1450
Poor Function 825 66 11 5 7 10 924
Possible Decreased Function 28 160 0 0 0 4 192
Ambiguous 479 29 0 0 6 1 515
Normal Function 19.382 7234 509 452 408 243 28.228
Indeterminate 250 2279 14 39 7 12 2601
Decreased Function 7764 1233 143 65 143 101 9449
rs12777823 Not actionable 29.406 10.501 618 499 572 359 41.955
Actionable 602 655 59 63 8 17 1404

*Indeterminate means the called genotype did not have an assigned function in the CPIC guidelines. No Result means that the genotype could not be called due to missing or invalid positions