Table 3.
Gene | Phenotype | Genetic Ancestry | ||||||
---|---|---|---|---|---|---|---|---|
EUR | AFR | EAS | SAS | AMR | UNK | TOTAL | ||
CACNA1S | Malignant Hyperthermia Susceptibility | 4 | 0 | 0 | 0 | 0 | 0 | 4 |
Uncertain Susceptibility | 30.000 | 11.154 | 676 | 562 | 580 | 376 | 43.348 | |
No Result | 4 | 2 | 1 | 0 | 0 | 0 | 7 | |
CFTR | Ivacaftor responsive in CF patients | 474 | 337 | 3 | 7 | 16 | 4 | 841 |
Ivacaftor non-responsive in CF patients | 29.512 | 10.808 | 674 | 555 | 564 | 372 | 42.485 | |
No Result | 22 | 11 | 0 | 0 | 0 | 0 | 33 | |
CYP2B6 | Intermediate Metabolizer | 10.475 | 5204 | 222 | 253 | 241 | 142 | 16.537 |
Ultrarapid Metabolizer | 30 | 11 | 3 | 3 | 0 | 0 | 47 | |
Ambiguous | 9 | 0 | 0 | 0 | 0 | 0 | 9 | |
Rapid Metabolizer | 965 | 266 | 57 | 19 | 15 | 17 | 1339 | |
Indeterminate | 1398 | 149 | 2 | 3 | 13 | 7 | 1572 | |
Normal Metabolizer | 15.056 | 3086 | 350 | 199 | 235 | 155 | 19.081 | |
Poor Metabolizer | 1776 | 2060 | 34 | 80 | 69 | 48 | 4067 | |
No Result | 299 | 380 | 9 | 5 | 7 | 7 | 707 | |
CYP2C19 | Intermediate Metabolizer | 7538 | 3465 | 322 | 246 | 119 | 119 | 11.809 |
Ultrarapid Metabolizer | 1389 | 542 | 0 | 29 | 12 | 12 | 1984 | |
Likely Poor Metabolizer | 3 | 71 | 0 | 0 | 1 | 1 | 76 | |
Likely Intermediate Metabolizer | 25 | 276 | 0 | 0 | 6 | 2 | 309 | |
Rapid Metabolizer | 8092 | 2603 | 9 | 90 | 126 | 68 | 10.988 | |
Indeterminate | 7 | 278 | 0 | 1 | 3 | 2 | 291 | |
Normal Metabolizer | 12.208 | 3441 | 245 | 122 | 305 | 153 | 16.474 | |
Poor Metabolizer | 692 | 423 | 98 | 67 | 8 | 19 | 1307 | |
No Result | 54 | 57 | 3 | 7 | 0 | 0 | 121 | |
CYP2C9 | Intermediate Metabolizer | 6889 | 2369 | 11 | 48 | 110 | 71 | 9498 |
Ambiguous | 4125 | 341 | 38 | 107 | 56 | 43 | 4710 | |
Indeterminate | 769 | 204 | 17 | 21 | 19 | 13 | 1043 | |
Normal Metabolizer | 18.170 | 8177 | 611 | 386 | 395 | 247 | 27.986 | |
Poor Metabolizer | 7 | 33 | 0 | 0 | 0 | 0 | 40 | |
No Result | 48 | 32 | 0 | 0 | 0 | 2 | 82 | |
CYP3A5 | Intermediate Metabolizer | 3898 | 5512 | 294 | 208 | 167 | 110 | 10.189 |
Poor Metabolizer | 25.959 | 3283 | 333 | 309 | 388 | 247 | 30.519 | |
Indeterminate | 2 | 1 | 0 | 0 | 0 | 0 | 3 | |
Normal Metabolizer | 146 | 2357 | 50 | 45 | 25 | 19 | 2642 | |
No Result | 3 | 3 | 0 | 0 | 0 | 0 | 6 | |
CYP4F2 | Not actionable | 16.837 | 9289 | 420 | 257 | 339 | 221 | 27.363 |
Actionable | 13.171 | 1867 | 257 | 305 | 241 | 155 | 15.996 | |
DPYD | Intermediate Metabolizer | 2028 | 676 | 16 | 50 | 21 | 18 | 2809 |
Ambiguous | 8 | 7 | 0 | 0 | 1 | 0 | 16 | |
Indeterminate | 642 | 511 | 6 | 23 | 16 | 10 | 1208 | |
Normal Metabolizer | 27.283 | 9952 | 655 | 487 | 542 | 348 | 39.267 | |
Poor Metabolizer | 47 | 10 | 0 | 2 | 0 | 0 | 59 | |
IFNL3/4 | not actionable | 13.637 | 2078 | 571 | 345 | 245 | 196 | 17.072 |
actionable | 16.371 | 9078 | 106 | 217 | 335 | 180 | 26.287 | |
NUDT15 | Intermediate Metabolizer | 317 | 36 | 103 | 53 | 40 | 20 | 569 |
Indeterminate | 163 | 77 | 38 | 1 | 13 | 7 | 299 | |
Normal Metabolizer | 29.526 | 11.043 | 524 | 506 | 527 | 349 | 42.475 | |
Poor Metabolizer | 1 | 0 | 6 | 2 | 0 | 0 | 9 | |
Possible Intermediate Metabolizer | 0 | 0 | 6 | 0 | 0 | 0 | 6 | |
No Result | 1 | 0 | 0 | 0 | 0 | 0 | 1 | |
RYR1 | Malignant Hyperthermia Susceptibility | 23 | 11 | 0 | 0 | 0 | 0 | 34 |
Uncertain Susceptibility | 29.979 | 11.143 | 676 | 562 | 580 | 376 | 43.316 | |
No Result | 6 | 2 | 1 | 0 | 0 | 0 | 9 | |
TPMT | Intermediate Metabolizer | 2293 | 1068 | 17 | 18 | 68 | 36 | 3500 |
Indeterminate | 466 | 995 | 16 | 10 | 15 | 11 | 1513 | |
Normal Metabolizer | 27.118 | 9007 | 643 | 533 | 493 | 325 | 38.119 | |
Poor Metabolizer | 54 | 34 | 0 | 0 | 1 | 1 | 90 | |
Possible Intermediate Metabolizer | 61 | 48 | 1 | 1 | 1 | 3 | 115 | |
No Result | 16 | 4 | 0 | 0 | 2 | 0 | 22 | |
UGT1A1 | Intermediate Metabolizer | 14.594 | 5708 | 274 | 316 | 276 | 182 | 21.350 |
Ambiguous | 11 | 6 | 0 | 0 | 0 | 0 | 17 | |
Indeterminate | 1322 | 702 | 3 | 44 | 24 | 6 | 2101 | |
Normal Metabolizer | 11.966 | 3233 | 328 | 140 | 232 | 146 | 16.045 | |
Poor Metabolizer | 1528 | 1199 | 67 | 44 | 37 | 31 | 2906 | |
No Result | 587 | 308 | 5 | 18 | 11 | 11 | 940 | |
VKORC1 | Actionable | 19.264 | 2327 | 663 | 183 | 389 | 252 | 23.078 |
Not actionable | 10.744 | 8829 | 14 | 379 | 191 | 124 | 20.281 | |
SLCO1B1 | Increased Function | 1280 | 155 | 0 | 1 | 9 | 5 | 1450 |
Poor Function | 825 | 66 | 11 | 5 | 7 | 10 | 924 | |
Possible Decreased Function | 28 | 160 | 0 | 0 | 0 | 4 | 192 | |
Ambiguous | 479 | 29 | 0 | 0 | 6 | 1 | 515 | |
Normal Function | 19.382 | 7234 | 509 | 452 | 408 | 243 | 28.228 | |
Indeterminate | 250 | 2279 | 14 | 39 | 7 | 12 | 2601 | |
Decreased Function | 7764 | 1233 | 143 | 65 | 143 | 101 | 9449 | |
rs12777823 | Not actionable | 29.406 | 10.501 | 618 | 499 | 572 | 359 | 41.955 |
Actionable | 602 | 655 | 59 | 63 | 8 | 17 | 1404 |
*Indeterminate means the called genotype did not have an assigned function in the CPIC guidelines. No Result means that the genotype could not be called due to missing or invalid positions