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. Author manuscript; available in PMC: 2022 Nov 28.
Published in final edited form as: Methods Enzymol. 2018 Feb 21;601:111–144. doi: 10.1016/bs.mie.2017.11.028

Fig. 2.

Fig. 2

Determining the processing window of a DSB repair event. Standard alignment tools will often treat base substitutions as sequencing error, which causes them to be called matches to the reference sequence. The Hi-FiBR analysis can recognize mismatches in a user-defined window around the break site (here shown as 4 bp on either side) and adjust the matching sequences. This also changes what the program considers as the processing window for repair event classification.