Table 2.

Prediction of rRNA transcription machineries in Entamoeba histolytica and Entamoeba dispar

Homo sapiens			Saccharomyces cerevisiae			Entamoeba histolytica (HM1-IMSS)					Entamoeba dispar (SAW760)
Gene	UniProtKBa	Sizeb	Gene	UniProtKBa	Sizeb	Gene	UniProtKBa	Sizeb	E-value	Ic	Gene	UniProtKBa	Sizeb	E-value	Ic
TBP-TAF complex SL1
TBP	P62380	339	TBP	P13393	240	EHI_077240 EHI_112050 EHI_020610	A7UFC2 C4M7H7 P52653	216 212 234	2e−66 2e−64 7e−64	56 56 56	EDI_292240 EDI_260400 EDI_172550	B0EHD5 B0EIX2 B0EIP7	216 212 234	6e−66 1e−64 4e−64	56 56 56
TAF1C	Q15572	869	Rrn6	P32786	894	–	–	–	–	–	–	–	–	–	–
TAF1B	Q53T94	588	Rrn7	P40992	514	–	–	–	–	–	–	–	–	–	–
TAF1A	Q15573	450	Rrn11	Q04712	507	–	–	–	–	–	–	–	–	–	–
TAF1D	Q9H5J8	278	–	–	–	–	–	–	–	–	–	–	–	–	–
TAF12	Q16514	161	–	–	–	EHI_118200 EHI_009490 EHI_118230	C4LZ03 C4LZ05	152 139	5e−07 2e−05	24 26	EDI_264420 EDI_322430 EDI_025860	B0ELF7 B0E5S5	152 139	4e−07 2e−05	24 26
RRN3	Q9NYV6	651	Rrn3	P36070	627	EHI_035130	C4M4Z3	466	3e−25d	15	EDI_198050	B0EPH1	466	3e−25d	15
Transcription activator UBF
UBF	P17480	764	UAF30	Q08747	228	EHI_045480 EHI_093800 EHI_179340	C4LTF9 C4LYH1 C4M9X4	111 114 384	3e−06 5e−06 4e−04	31 30 35	EDI_340970 EDI_049480 EDI_110640 EDI_085740	B0EV32 B0EFF8 B0EK44 B0EF23	111 112 395 106	3e−06 3e−06 3e−04 6e−04	33 31 35 40
			Rrn5	Q02983	363
			Rrn9	P53437	365
			Rrn10	P38204	145
RNA polymerase I complex
POLR1A	O95602	1720	A190	P10964	1664	EHI_095890 EHI_121760 EHI_125350	C4M3E6 Q6IUR3 C4M626	1570 1636 1379	5e−106 5e−106 3e−97	36 30 35	EDI_337480 EDI_169920 EDI_116030	B0EDI6 B0E6R8 B0EG66	1568 1587 1379	4e−102 4e−102 5e−98	36 30 35
POLR1B	Q9H9Y6	1135	A135	P22138	1203	EHI_186020 EHI_095860 EHI_022940	C4MAB3 C4M3E3 C4LUK7	1106 1122 1170	1e−132 1e−132 1e−119	39 31 28	EDI_303700 EDI_337350 EDI_248550	B0ERH0 B0EDI3 B0EG45	1106 1075 1170	2e−124 2e−124 1e−119	40 32 28
POLR1C	O15160	346	AC40	P07703	335	EHI_178010	C4M554	283	5e−24	27	EDI_002920 EDI_044160	B0EJB9 B0EHR6	291 283	1e−73 4e−24	44 27
POLR1D	P0DPB6	133	AC19	P28000	142	EHI_087360	C4LXS9	112	9e−12	34	EDI_085890 EDI_290250	B0E866	112	3e−11	33
POLR1E	Q9GZS1	414	A49	Q01080	415	–	–	–	–	–	–	–	–	–	–
POLR1F	Q3B726	338	A43	P46669	326	EHI_124360	B1N352	212	2e−05	29	EDI_023800	B0EHA3	212	2e−05	28
POLR1G	O15446	510	A34.5	P47006	233	–	–	–	–	–	–	–	–	–	–
POLR1H	Q9P1U0	126	A12.2	P32529	125	EHI_044620 EHI_137900	C4LT84	122	1e−16	40	EDI_323220 EDI_246270	B0EEN5	122	1e−16	40
POLR2E	P19388	210	Rpb5	P20434	215	EHI_142090	C4LW54	204	1e−47	39	EDI_338140	B0EA74	204	6e−48	39
POLR2F	P61218	127	Rpb6	P20435	155	EHI_088230	C4M6S1	122	2e−32	73	EDI_088050 EDI_320930	B0EM77	122	6e−32	72
POLR2H	P52434	150	Rpb8	P20436	146	EHI_038570	C4LZP1	143	6e−15	31	EDI_259550	B0EB74	143	3e−15	31
POLR2K	P53803	58	Rpb12	P40422	70	–	–	–	–	–	–	–	–	–	–
POLR2L	P62875	67	Rpb10	P22139	70	EHI_122780	C4M5M4	73	2e−19	56	–	–	–	–	–
RPA3	P35244	121	RPA14	P50106	137	–	–	–	–	–	–	–	–	–	–

^aAccess number in the UniProt Knowledgebase

^bNumber of amino acids

^cI (Identity) values expressed in percentage (%)

^dSrivastava et al. [31]