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. 2022 Nov 15;13:1055996. doi: 10.3389/fmicb.2022.1055996

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Copyright © 2022 Zhu, Zhao, Yang, Zhang, Lin, Weng, Wang, Cheng, Chi, Wei, Peng and Hu.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Pathogens detected by metagenomic next-generation sequencing. (A) The total number of pathogens presented per metagenomic next-generation sequencing (mNGS) report. (B) The proportions of every species reported by mNGS. The “Others” category included Chlamydia psittaci, Parachlamydia acan thamoebae, and Treponema pallidum (four positive identifications). (C) The proportion of each pathogen reported by mNGS. (D) The numbers of sequence reads reported by mNGS in different pathogens.