Table 1.

Sequences of oligonucleotide primers and PCR conditions for the genotyping of H. pylori isolates.

Genes	primer F (5'⇒3')	Primer R (5‘⇒3’)	Annealing temp	Cycles	Amplified DNA size (bp)	References
cagA5’region	GATAACAGGCAAGCTTTTGATG	CTGCAAAAGATTGTTTGGCAGA	55°C	35	349	[16]
cagA EPIYA FR	ACCCTAGTCGGTAATGGG	GCAATTTTGTTAATCCGGTC	48°C	30	293~299	[72]
cagA EPIYA JSR	GCAATTTTGTTAATCCGGTC	GCTTTAGCTTCTGAYACYGC	48°C	30	222	[72]
vacA s1/s2	ATGGAAATACAACAAACACAC	CTGCTTGAATGCGCCAAAC	52°C	35	259/286	[73]
vacA s1a s1a	TCTYGCTTTAGTAGGAGC	CTGCTTGAATGCGCCAAAC	52°C	35	212	[16]
vacA s1b ss3	AGCGCCATACCGCAAGAG	CTGCTTGAATGCGCCAAAC	55°C	35	187	[73]
vacA s1c s1c	CTYCTTTAGTRGGGYTA	CTGCTTGAATGCGCCAAAC	55°C	35	213	[16]
vacA m1/m2	CAATCTGTCCAATCAAGCGAG	GCGTCTAAATAATTCCAAGG	52°C	35	570/645	[16]
vacA i1	TTAATTTAACGCTGTTTGAAG	GTTGGGATTGGGGGAATGCCG	53°C	35	426	[74]
vacA i2	GATCAACGCTCTGATTTGA	GTTGGGATTGGGGGAATGCCG	53°C	35	432	[74]
alpA	ACGCTTTCTCCCAATACC	AACACATTCCCCGCATTC	65°C	40	304	[75]
alpB	TCGCCGGGACTTTGGGCAAC	TGCGCTAAAGCGGCGTCCAA	55°C	35	505	Designed
oipA	CAAGCGCTTAACAGATAGGC	AAGGCGTTTTCTGCTGAAGC	55°C	35	450	[76]
babA2	AATCCAAAAAGGAGAAAAAACATGAAA	ATAGTTGTCTGAAAGATC	50°C	38	180	[26]
hopZ	GCCTGATATGGGTGGCATGGG	ATTTGATAGCCCGCGCTGAT	50°C	35	493	[77]
sabA	GAGCTATTGACCAGCTCAATG	TAGTTTGGATTCGTTCTCATTA	50°C	35	447	[78]
iceA1	TATTTCTGGAACTTGCGCAACCTGAT	GGCCTACAACCGCATGGATAT	55°C	30	642	[79]
iceA2	CGGCTGTAGGCACTAAAGCTA	TCAATCCTATGTGAAACAATGATCGTT	55°C	30	662	[79]
iceA1Δ94	GGTGAGTCGTTGGGTAAGCGTTACAGAATT	CACAACCATCATATTCAGCCTCCCCCTCATA	55°C	30	520	[79]
hrgA	TCTCGTGAAAGAGAATTTCC	TAAGTGTGGGTATATCAATC	55°C	30	682	[80]
hpyIIIR	CTCATTGCTGTGAGGGAT	TCTTGATAGGATCTTGCG	55°C	30	443	[80]
hpyIIIM	CTCATTGCTGTGAGGGAT	TCTTGATAGGATCTTGCG	55°C	30	562	[80]
dupA jhp0917	TGGTTTCTACTGACAGAGCGC	AACACGCTGACAGGACAATCTCCC	57°C	30	307	[22]
dupA jhp0918	CCTATATCGCTAACGCGCGCTC	AAGCTGAAGCGTTTGTAACG	57°C	30	276	[22]