Figure 5.
Accuracy of recoded data increases with alignment size
(A) Accuracy of amino acid and recoded datasets of 1,000, 5,000, 10,000 and 30,000 sites analyzed under nCAT10, when the generating tree assumes Ctenophora-sister to be true.
(B) Success rate of amino acid and Dayhoff-6 datasets of 1,000, 5,000, 10,000 and 30,000 sites analyzed under nCAT10, when the generating tree assumes Porifera-sister to be true. Analyses performed in Phylobayes. In Green: Correct trees; Dark Orange: Incorrect Trees; Light Orange: Uncertain trees.
